Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s67.

Sample reads: 124,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4828.90 38868.16
2. MT-ATP6 MT-ATP6 4331.30 34862.94
3. MT-ND5 MT-ND5 3315.05 26683.07
4. MT-ND1 MT-ND1 2039.49 16416.00
5. GAPDH ENSGALG00000014442 1927.36 15513.46 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
6. MT-CYB MT-CYB 1822.23 14667.26
7. MT-ND4 MT-ND4 1773.17 14272.37
8. gga-mir-3527 gga-mir-3527 1752.14 14103.10
9. EEF1A EEF1A 1640.01 13200.56
10. MT-CO1 MT-CO1 1555.90 12523.55
11. PPIA ENSGALG00000028600 1324.62 10661.96 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
12. gga-mir-3533 ENSGALG00000027736 1261.54 10154.23 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
13. MT-ND3 MT-ND3 981.20 7897.75
14. NME2 ENSGALG00000002932 883.08 7107.97 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPS23 ENSGALG00000015617 714.87 5754.04 ribosomal protein S23
16. ENO1 ENSGALG00000002377 679.83 5472.00 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
17. RPL5 ENSGALG00000005922 672.82 5415.58 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. RPS7 ENSGALG00000016392 581.71 4682.23 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
19. RPL15 ENSGALG00000011290 553.68 4456.61 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
20. RPL8 ENSGALG00000016232 497.61 4005.30 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. MDK ENSGALG00000008367 483.59 3892.45 midkine [Source:NCBI gene;Acc:423196]
22. RPS6 ENSGALG00000015082 469.57 3779.60 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
23. CIRBP ENSGALG00000030918 462.57 3723.26 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
24. RPS3 ENSGALG00000017330 455.56 3666.83 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
25. ENSGALG00000018384 ENSGALG00000018384 427.52 3441.14
26. ENSGALG00000002696 ENSGALG00000002696 420.51 3384.71
27. EIF4G2 ENSGALG00000005587 399.49 3215.52 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
28. RPL23 ENSGALG00000001634 399.49 3215.52 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
29. RPL26 RPL26 399.49 3215.52
30. RPL18A 392.48 3159.10 ribosomal protein L18a
31. STMN1 ENSGALG00000001475 371.45 2989.83 stathmin 1 [Source:NCBI gene;Acc:396057]
32. EIF1 ENSGALG00000028517 364.45 2933.48 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
33. RPS11 ENSGALG00000017299 357.44 2877.06 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
34. EEF1B2 ENSGALG00000008590 350.43 2820.64 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
35. ATP6V0C ENSGALG00000009229 343.42 2764.21 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
36. ENSGALG00000018386 ENSGALG00000018386 343.42 2764.21
37. H3-IX H3-IX 329.40 2651.36
38. RPL7 ENSGALG00000035252 329.40 2651.36 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
39. RPL7A ENSGALG00000003197 329.40 2651.36 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
40. RPS27A ENSGALG00000036790 329.40 2651.36 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
41. RAN ENSGALG00000002569 315.39 2538.60 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
42. RPS10 ENSGALG00000002813 315.39 2538.60 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
43. ATP5G3 308.38 2482.17 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
44. IGF2BP3 ENSGALG00000010961 308.38 2482.17 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
45. RPSA 308.38 2482.17 ribosomal protein SA
46. FKBP4 ENSGALG00000014331 301.37 2425.75 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
47. RPL32 ENSGALG00000027142 294.36 2369.32 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
48. RPS24 ENSGALG00000004871 294.36 2369.32 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
49. RPS4 RPS4 294.36 2369.32
50. TMSB4X ENSGALG00000026383 294.36 2369.32 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
51. ERH ENSGALG00000017384 287.35 2312.90 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
52. KPNA2 ENSGALG00000003584 287.35 2312.90 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
53. MIF ENSGALG00000006326 280.34 2256.48 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
54. RPL27A ENSGALG00000005948 280.34 2256.48 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
55. RPL4 ENSGALG00000007711 280.34 2256.48 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
56. HMGN5 ENSGALG00000007131 273.33 2200.05 high mobility group nucleosome binding domain 5, transcript variant X1
57. MT-ND2 MT-ND2 273.33 2200.05
58. RPS20 ENSGALG00000014432 273.33 2200.05 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
59. RPS14 ENSGALG00000004588 266.33 2143.71 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
60. RPS8 ENSGALG00000010124 259.32 2087.29 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
61. RPL27 ENSGALG00000002837 252.31 2030.86 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
62. RPL31 ENSGALG00000016775 252.31 2030.86 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
63. CRHOA CRHOA 245.30 1974.44
64. EIF3F ENSGALG00000005326 245.30 1974.44 eukaryotic translation initiation factor 3 subunit F
65. HBE 245.30 1974.44 hemoglobin subunit epsilon
66. RPS12 ENSGALG00000013990 245.30 1974.44 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
67. RPS29 ENSGALG00000012229 245.30 1974.44 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
68. MEIS2 ENSGALG00000039118 238.29 1918.01 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
69. RPL35A ENSGALG00000007611, ENSGALG00000041230 238.29 1918.01 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
70. RPS15A ENSGALG00000006771 238.29 1918.01 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
71. HMGN2 HMGN2 231.28 1861.59
72. BTF3L4 ENSGALG00000010570 224.27 1805.17 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
73. ENSGALG00000028992 ENSGALG00000028992 224.27 1805.17
74. RPL38 ENSGALG00000001465 224.27 1805.17 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
75. ANP32B ENSGALG00000037483 217.27 1748.82 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
76. RPL21 ENSGALG00000027035 217.27 1748.82 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
77. RPL37 ENSGALG00000014833 217.27 1748.82 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
78. COX6C ENSGALG00000035996 210.26 1692.40 cytochrome c oxidase subunit 6C [Source:NCBI gene;Acc:420243]
79. EIF5A2 ENSGALG00000009309 210.26 1692.40 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
80. HNRNPA3 ENSGALG00000009250 210.26 1692.40 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
81. PGK1 ENSGALG00000007936 210.26 1692.40 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
82. SLC25A6_1 ENSGALG00000016691 210.26 1692.40 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
83. CALM CALM 203.25 1635.97
84. EEF1D 203.25 1635.97 eukaryotic translation elongation factor 1 delta, transcript variant X13
85. RPL10A ENSGALG00000002644 203.25 1635.97 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
86. RPS15 ENSGALG00000015195 203.25 1635.97 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
87. RPS3A ENSGALG00000010077 203.25 1635.97 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
88. ALDH1A2 ENSGALG00000004270 189.23 1523.13 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
89. LDHB ENSGALG00000035836 189.23 1523.13 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
90. NDUFA11 ENSGALG00000021692 189.23 1523.13 NADH:ubiquinone oxidoreductase subunit A11
91. NDUFB9 ENSGALG00000042242 189.23 1523.13 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
92. CDK1 ENSGALG00000003085 182.22 1466.70 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
93. RPL12 ENSGALG00000008806 182.22 1466.70 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
94. TCEB3 ENSGALG00000034625 182.22 1466.70 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
95. ENSGALG00000028649 ENSGALG00000028649 175.21 1410.28
96. HMGB1 ENSGALG00000042875 175.21 1410.28 high mobility group box 1 [Source:NCBI gene;Acc:395724]
97. HSPA8 ENSGALG00000006512 175.21 1410.28 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
98. RPL23A ENSGALG00000003966 175.21 1410.28 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
99. RPL37A ENSGALG00000011472 175.21 1410.28 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
100. RPL9 ENSGALG00000000150 175.21 1410.28 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA