Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s64.

Sample reads: 124,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5297.78 42642.46
2. MT-ND5 MT-ND5 3081.59 24804.08
3. MT-ATP6 MT-ATP6 2749.93 22134.51
4. GAPDH ENSGALG00000014442 2422.66 19500.28 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
5. EEF1A EEF1A 2141.52 17237.35
6. MT-CYB MT-CYB 2073.43 16689.28
7. MT-ND4 MT-ND4 1834.02 14762.25
8. gga-mir-3527 gga-mir-3527 1827.43 14709.20
9. MT-CO1 MT-CO1 1722.00 13860.58
10. MT-ND1 MT-ND1 1700.03 13683.74
11. MT-ND3 MT-ND3 1291.50 10395.44
12. gga-mir-3533 ENSGALG00000027736 1005.96 8097.09 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
13. NME2 ENSGALG00000002932 968.62 7796.54 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. RPL5 ENSGALG00000005922 898.34 7230.85 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
15. PPIA ENSGALG00000028600 843.43 6788.87 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. ENO1 ENSGALG00000002377 727.02 5851.87 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
17. RPL8 ENSGALG00000016232 667.71 5374.48 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
18. RPS6 ENSGALG00000015082 667.71 5374.48 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. RPS23 ENSGALG00000015617 612.80 4932.50 ribosomal protein S23
20. MDK ENSGALG00000008367 546.91 4402.14 midkine [Source:NCBI gene;Acc:423196]
21. ENSGALG00000002696 ENSGALG00000002696 511.77 4119.30
22. RPS7 ENSGALG00000016392 505.18 4066.25 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
23. RPL15 ENSGALG00000011290 492.00 3960.17 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
24. STMN1 ENSGALG00000001475 492.00 3960.17 stathmin 1 [Source:NCBI gene;Acc:396057]
25. ENSGALG00000018384 ENSGALG00000018384 476.62 3836.37
26. RPL7A ENSGALG00000003197 456.86 3677.32 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
27. RPS10 ENSGALG00000002813 454.66 3659.61 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
28. RPL26 RPL26 450.27 3624.28
29. RPS3 ENSGALG00000017330 445.87 3588.86 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
30. ENSGALG00000018386 ENSGALG00000018386 441.48 3553.53
31. RPL7 ENSGALG00000035252 432.70 3482.85 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
32. RPL27A ENSGALG00000005948 421.71 3394.39 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
33. MT-ND2 MT-ND2 412.93 3323.72
34. CIRBP ENSGALG00000030918 397.55 3199.93 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
35. EIF4G2 ENSGALG00000005587 393.16 3164.59 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
36. RPS4 RPS4 393.16 3164.59
37. RPL18A 390.96 3146.88 ribosomal protein L18a
38. RPL23 ENSGALG00000001634 377.79 3040.88 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
39. FKBP4 ENSGALG00000014331 355.82 2864.04 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
40. EEF1B2 ENSGALG00000008590 351.43 2828.70 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
41. RPL31 ENSGALG00000016775 333.86 2687.28 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
42. RPS27A ENSGALG00000036790 329.46 2651.86 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
43. RPS12 ENSGALG00000013990 318.48 2563.48 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
44. TMSB4X ENSGALG00000026383 318.48 2563.48 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
45. RPL10A ENSGALG00000002644 309.70 2492.81 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
46. RPS20 ENSGALG00000014432 309.70 2492.81 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
47. RPL21 ENSGALG00000027035 307.50 2475.10 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
48. ATP6V0C ENSGALG00000009229 298.71 2404.35 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
49. RPL37 ENSGALG00000014833 298.71 2404.35 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
50. RPS16 ENSGALG00000026490 298.71 2404.35 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
51. RPL38 ENSGALG00000001465 292.12 2351.31 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
52. RAN ENSGALG00000002569 287.73 2315.97 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
53. RPSA 287.73 2315.97 ribosomal protein SA
54. CRHOA CRHOA 285.54 2298.35
55. RPL35A ENSGALG00000007611, ENSGALG00000041230 281.14 2262.93 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
56. RPS11 ENSGALG00000017299 278.95 2245.30 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
57. ENSGALG00000028992 ENSGALG00000028992 270.16 2174.55
58. RPS29 ENSGALG00000012229 270.16 2174.55 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
59. MIF ENSGALG00000006326 263.57 2121.51 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
60. RPL32 ENSGALG00000027142 263.57 2121.51 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
61. RPS14 ENSGALG00000004588 252.59 2033.13 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
62. RPL27 ENSGALG00000002837 250.39 2015.42 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
63. SLC25A6_1 ENSGALG00000016691 250.39 2015.42 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
64. ATP5G3 248.20 1997.79 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
65. MEIS2 ENSGALG00000039118 248.20 1997.79 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
66. SNRPG ENSGALG00000028409 241.61 1944.75 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
67. PGK1 ENSGALG00000007936 239.41 1927.04 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
68. RPL14 ENSGALG00000043379 239.41 1927.04 ribosomal protein L14
69. H3-IX H3-IX 230.62 1856.29
70. HMGN5 ENSGALG00000007131 226.23 1820.95 high mobility group nucleosome binding domain 5, transcript variant X1
71. HNRNPDL ENSGALG00000023199 224.04 1803.32 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
72. RPS3A ENSGALG00000010077 224.04 1803.32 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
73. KPNA2 ENSGALG00000003584 221.84 1785.62 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
74. NDUFB9 ENSGALG00000042242 221.84 1785.62 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
75. RPL36 ENSGALG00000000474 221.84 1785.62 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
76. RPS24 ENSGALG00000004871 221.84 1785.62 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
77. RPS8 ENSGALG00000010124 221.84 1785.62 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
78. RPS15A ENSGALG00000006771 217.45 1750.28 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
79. ERH ENSGALG00000017384 215.25 1732.57 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
80. RPLP1 ENSGALG00000030878 208.66 1679.53 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
81. RPL4 ENSGALG00000007711 206.46 1661.82 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
82. RPL12 ENSGALG00000008806 202.07 1626.49 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
83. RPL13 ENSGALG00000006179 202.07 1626.49 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
84. RPS15 ENSGALG00000015195 199.87 1608.78 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
85. RPS21 ENSGALG00000005338 199.87 1608.78 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
86. ENSGALG00000028649 ENSGALG00000028649 197.68 1591.15
87. IGF2BP3 ENSGALG00000010961 197.68 1591.15 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
88. ANP32B ENSGALG00000037483 195.48 1573.44 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
89. COX7C ENSGALG00000027963 195.48 1573.44 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
90. H2AFZ ENSGALG00000014023 195.48 1573.44 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
91. ALDH1A2 ENSGALG00000004270 193.29 1555.81 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
92. RPL29 ENSGALG00000026978 193.29 1555.81 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
93. C5ORF13 C5ORF13 191.09 1538.11
94. NONO ENSGALG00000005507 191.09 1538.11 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
95. RPL6 ENSGALG00000004818 188.89 1520.40 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
96. HNRNPA3 ENSGALG00000009250 184.50 1485.06 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
97. EIF3F ENSGALG00000005326 182.30 1467.35 eukaryotic translation initiation factor 3 subunit F
98. EIF5A2 ENSGALG00000009309 180.11 1449.73 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
99. EIF1 ENSGALG00000028517 175.71 1414.31 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
100. EEF1D 171.32 1378.98 eukaryotic translation elongation factor 1 delta, transcript variant X13
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA