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Experiment Chicken_E3_anterior_slice_3, section s62.

Sample reads: 124,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 7130.45 57390.59
2. MT-CO3 MT-CO3 6914.16 55649.75
3. MT-ND5 MT-ND5 5837.38 46983.11
4. MT-ND4 MT-ND4 3488.48 28077.60
5. MT-ND1 MT-ND1 3153.58 25382.10
6. gga-mir-3527 gga-mir-3527 2834.97 22817.72
7. MT-CYB MT-CYB 2725.66 21937.92
8. MT-ND3 MT-ND3 2618.68 21076.87
9. EEF1A EEF1A 1844.24 14843.67
10. MT-CO1 MT-CO1 1681.45 13533.43
11. GAPDH ENSGALG00000014442 1548.88 12466.41 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. RPL5 ENSGALG00000005922 1141.89 9190.69 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
13. gga-mir-3533 ENSGALG00000027736 1023.29 8236.12 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
14. PPIA ENSGALG00000028600 972.12 7824.27 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
15. NME2 ENSGALG00000002932 834.91 6719.91 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. RPS3 ENSGALG00000017330 709.32 5709.08 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
17. HBE 644.21 5185.03 hemoglobin subunit epsilon
18. RPS23 ENSGALG00000015617 634.90 5110.10 ribosomal protein S23
19. ENO1 ENSGALG00000002377 625.60 5035.24 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
20. RPS7 ENSGALG00000016392 616.30 4960.39 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
21. MT-ND2 MT-ND2 530.25 4267.80
22. RPS6 ENSGALG00000015082 525.60 4230.38 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
23. RPS10 ENSGALG00000002813 469.78 3781.10 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
24. RPL26 RPL26 460.48 3706.25
25. RPL7 ENSGALG00000035252 439.55 3537.79 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
26. RPL23 ENSGALG00000001634 437.22 3519.04 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
27. RPS4 RPS4 434.90 3500.36
28. RPL8 ENSGALG00000016232 427.92 3444.18 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
29. RPL31 ENSGALG00000016775 413.97 3331.91 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
30. HBG1 HBG1 404.66 3256.97
31. RPL7A ENSGALG00000003197 404.66 3256.97 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
32. RPL18A 402.34 3238.30 ribosomal protein L18a
33. RPL27A ENSGALG00000005948 400.01 3219.55 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
34. RPS20 ENSGALG00000014432 393.03 3163.37 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
35. MDK ENSGALG00000008367 388.38 3125.94 midkine [Source:NCBI gene;Acc:423196]
36. RPS29 ENSGALG00000012229 379.08 3051.09 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
37. RPL37 ENSGALG00000014833 376.76 3032.41 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
38. EEF1B2 ENSGALG00000008590 369.78 2976.23 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
39. RPL27 ENSGALG00000002837 362.80 2920.06 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
40. RPS24 ENSGALG00000004871 362.80 2920.06 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
41. RPS16 ENSGALG00000026490 360.48 2901.38 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
42. EIF4G2 ENSGALG00000005587 341.87 2751.60 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
43. RPL15 ENSGALG00000011290 341.87 2751.60 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
44. RPS11 ENSGALG00000017299 339.55 2732.92 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
45. RPS27A ENSGALG00000036790 332.57 2676.74 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
46. STMN1 ENSGALG00000001475 325.59 2620.56 stathmin 1 [Source:NCBI gene;Acc:396057]
47. RPL38 ENSGALG00000001465 318.61 2564.38 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
48. RPSA 316.29 2545.71 ribosomal protein SA
49. RPS14 ENSGALG00000004588 313.96 2526.96 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
50. RPL35A ENSGALG00000007611, ENSGALG00000041230 309.31 2489.53 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
51. ENSGALG00000018386 ENSGALG00000018386 306.99 2470.86
52. HBZ ENSGALG00000023740 304.66 2452.11 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
53. ATP6V0C ENSGALG00000009229 302.33 2433.35 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
54. RPL36 ENSGALG00000000474 293.03 2358.50 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
55. RPL10A ENSGALG00000002644 286.06 2302.40 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
56. ENSGALG00000018384 ENSGALG00000018384 283.73 2283.65
57. ENSGALG00000028992 ENSGALG00000028992 281.40 2264.89
58. RPL23A ENSGALG00000003966 279.08 2246.22 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
59. ENSGALG00000002696 ENSGALG00000002696 276.75 2227.47
60. RPS12 ENSGALG00000013990 276.75 2227.47 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
61. SNRPG ENSGALG00000028409 267.45 2152.62 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
62. SLC25A6_1 ENSGALG00000016691 258.15 2077.76 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
63. TMSB4X ENSGALG00000026383 253.50 2040.34 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
64. RPL29 ENSGALG00000026978 244.19 1965.40 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
65. RPS21 ENSGALG00000005338 244.19 1965.40 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
66. FKBP4 ENSGALG00000014331 237.22 1909.30 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
67. KPNA2 ENSGALG00000003584 237.22 1909.30 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
68. LDHB ENSGALG00000035836 225.59 1815.70 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
69. RPLP1 ENSGALG00000030878 225.59 1815.70 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
70. RPS8 ENSGALG00000010124 225.59 1815.70 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
71. RPL32 ENSGALG00000027142 220.94 1778.27 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
72. RPL14 ENSGALG00000043379 216.29 1740.85 ribosomal protein L14
73. C5ORF13 C5ORF13 211.63 1703.34
74. RPL12 ENSGALG00000008806 211.63 1703.34 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
75. RPL21 ENSGALG00000027035 211.63 1703.34 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
76. RAN ENSGALG00000002569 209.31 1684.67 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
77. COX7C ENSGALG00000027963 204.66 1647.24 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
78. EEF1D 204.66 1647.24 eukaryotic translation elongation factor 1 delta, transcript variant X13
79. ATP5G3 202.33 1628.49 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
80. RPS15 ENSGALG00000015195 200.01 1609.81 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
81. RPS15A ENSGALG00000006771 197.68 1591.06 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
82. RPL4 ENSGALG00000007711 195.35 1572.31 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
83. MIF ENSGALG00000006326 190.70 1534.88 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
84. RPS3A ENSGALG00000010077 190.70 1534.88 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
85. NDUFB9 ENSGALG00000042242 188.38 1516.21 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
86. TXN ENSGALG00000015704 183.73 1478.78 thioredoxin [Source:NCBI gene;Acc:396437]
87. CRHOA CRHOA 181.40 1460.03
88. RPS17 ENSGALG00000002157 181.40 1460.03 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
89. CRABP-I ENSGALG00000003193 179.08 1441.35 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
90. SNRPE ENSGALG00000000137 179.08 1441.35 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
91. TCEB3 ENSGALG00000034625 176.75 1422.60 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
92. CIRBP ENSGALG00000030918 174.42 1403.85 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
93. EIF3F ENSGALG00000005326 174.42 1403.85 eukaryotic translation initiation factor 3 subunit F
94. HSPA8 ENSGALG00000006512 174.42 1403.85 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
95. EIF1 ENSGALG00000028517 172.10 1385.17 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
96. ERH ENSGALG00000017384 165.12 1329.00 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
97. MT-ND6 MT-ND6 165.12 1329.00
98. HNRNPDL ENSGALG00000023199 162.80 1310.32 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
99. TPT1 ENSGALG00000028872 162.80 1310.32 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
100. CDC42 ENSGALG00000004796 158.14 1272.82 cell division cycle 42 [Source:NCBI gene;Acc:395917]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA