Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s60.

Sample reads: 124,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ND5 MT-ND5 4800.78 38640.19
2. MT-CO3 MT-CO3 4582.77 36885.49
3. MT-ATP6 MT-ATP6 3867.74 31130.40
4. MT-CYB MT-CYB 2150.75 17310.81
5. MT-ND4 MT-ND4 2001.64 16110.66
6. EEF1A EEF1A 1768.95 14237.80
7. GAPDH ENSGALG00000014442 1710.21 13765.02 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
8. MT-CO1 MT-CO1 1704.56 13719.55
9. MT-ND1 MT-ND1 1563.36 12583.07
10. gga-mir-3533 ENSGALG00000027736 1415.38 11392.01 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. gga-mir-3527 gga-mir-3527 1409.74 11346.62
12. MT-ND3 MT-ND3 1381.50 11119.32
13. PPIA ENSGALG00000028600 1075.38 8655.45 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 908.20 7309.86 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 725.20 5836.94 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. HBE 709.39 5709.69 hemoglobin subunit epsilon
17. HBG1 HBG1 654.04 5264.19
18. MDK ENSGALG00000008367 637.09 5127.77 midkine [Source:NCBI gene;Acc:423196]
19. RPS23 ENSGALG00000015617 602.07 4845.90 ribosomal protein S23
20. RPS6 ENSGALG00000015082 594.17 4782.32 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
21. HBZ ENSGALG00000023740 523.00 4209.49 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
22. RPS7 ENSGALG00000016392 523.00 4209.49 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
23. RPL8 ENSGALG00000016232 513.97 4136.81 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
24. ENO1 ENSGALG00000002377 481.21 3873.13 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
25. EIF4G2 ENSGALG00000005587 471.04 3791.27 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
26. RPS3 ENSGALG00000017330 471.04 3791.27 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
27. RPL7A ENSGALG00000003197 452.97 3645.83 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
28. ATP6V0C ENSGALG00000009229 447.32 3600.36 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
29. ENSGALG00000002696 ENSGALG00000002696 443.93 3573.07
30. RPL15 ENSGALG00000011290 443.93 3573.07 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
31. RPL26 RPL26 424.73 3418.54
32. STMN1 ENSGALG00000001475 423.60 3409.44 stathmin 1 [Source:NCBI gene;Acc:396057]
33. RPL18A 416.82 3354.87 ribosomal protein L18a
34. RPL7 ENSGALG00000035252 404.40 3254.91 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
35. RPL23 ENSGALG00000001634 380.67 3063.91 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
36. RPL27A ENSGALG00000005948 379.54 3054.82 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
37. RPS10 ENSGALG00000002813 372.77 3000.33 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
38. CIRBP ENSGALG00000030918 363.73 2927.57 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
39. RPS4 RPS4 361.47 2909.38
40. FKBP4 ENSGALG00000014331 356.95 2872.99 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
41. EEF1B2 ENSGALG00000008590 352.43 2836.61 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
42. ENSGALG00000018384 ENSGALG00000018384 349.05 2809.41
43. RPS20 ENSGALG00000014432 326.45 2627.51 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
44. RPS27A ENSGALG00000036790 321.93 2591.13 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
45. TMSB4X ENSGALG00000026383 300.47 2418.40 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
46. RPL31 ENSGALG00000016775 299.34 2409.31 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
47. MT-ND2 MT-ND2 298.21 2400.21
48. RPS16 ENSGALG00000026490 292.57 2354.82 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
49. ENSGALG00000018386 ENSGALG00000018386 286.92 2309.34
50. ATP5G3 283.53 2282.06 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
51. RPS11 ENSGALG00000017299 282.40 2272.96 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
52. RPS12 ENSGALG00000013990 269.97 2172.92 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
53. EIF1 ENSGALG00000028517 267.71 2154.73 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
54. RPS24 ENSGALG00000004871 267.71 2154.73 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
55. RPL21 ENSGALG00000027035 255.29 2054.76 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
56. RPSA 255.29 2054.76 ribosomal protein SA
57. SLC25A6_1 ENSGALG00000016691 255.29 2054.76 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
58. RAN ENSGALG00000002569 247.38 1991.10 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
59. ERH ENSGALG00000017384 245.12 1972.91 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
60. RPL35A ENSGALG00000007611, ENSGALG00000041230 245.12 1972.91 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
61. EIF3F ENSGALG00000005326 239.47 1927.43 eukaryotic translation initiation factor 3 subunit F
62. ENSGALG00000028992 ENSGALG00000028992 238.34 1918.33
63. SNRPG ENSGALG00000028409 233.83 1882.04 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
64. RPS15A ENSGALG00000006771 232.70 1872.94 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
65. RPL37 ENSGALG00000014833 231.57 1863.84 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
66. RPL32 ENSGALG00000027142 229.31 1845.65 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
67. HMGN5 ENSGALG00000007131 228.18 1836.56 high mobility group nucleosome binding domain 5, transcript variant X1
68. H3-IX H3-IX 225.92 1818.37
69. RPL27 ENSGALG00000002837 222.53 1791.08 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
70. EEF1D 220.27 1772.89 eukaryotic translation elongation factor 1 delta, transcript variant X13
71. MIF ENSGALG00000006326 220.27 1772.89 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
72. RPL10A ENSGALG00000002644 216.88 1745.61 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
73. RPLP1 ENSGALG00000030878 214.62 1727.42 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
74. RPS3A ENSGALG00000010077 213.49 1718.32 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
75. TXN ENSGALG00000015704 211.23 1700.13 thioredoxin [Source:NCBI gene;Acc:396437]
76. NDUFB9 ENSGALG00000042242 210.10 1691.04 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
77. CRHOA CRHOA 204.46 1645.64
78. RPL29 ENSGALG00000026978 204.46 1645.64 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
79. RPL14 ENSGALG00000043379 202.20 1627.45 ribosomal protein L14
80. RPL4 ENSGALG00000007711 201.07 1618.36 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
81. RPL23A ENSGALG00000003966 199.94 1609.26 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
82. RPL36 ENSGALG00000000474 199.94 1609.26 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
83. RPS29 ENSGALG00000012229 199.94 1609.26 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
84. RPS8 ENSGALG00000010124 198.81 1600.17 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
85. RPL12 ENSGALG00000008806 197.68 1591.07 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
86. RPL3 ENSGALG00000012172 196.55 1581.98 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
87. ANP32B ENSGALG00000037483 195.42 1572.88 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
88. TPT1 ENSGALG00000028872 189.77 1527.41 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
89. ALDH1A2 ENSGALG00000004270 187.51 1509.22 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
90. LDHB ENSGALG00000035836 186.38 1500.12 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
91. RPS14 ENSGALG00000004588 185.25 1491.03 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
92. C5ORF13 C5ORF13 180.74 1454.73
93. MEIS2 ENSGALG00000039118 177.35 1427.44 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
94. NONO ENSGALG00000005507 173.96 1400.16 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
95. RPL38 ENSGALG00000001465 173.96 1400.16 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
96. MT-ND6 MT-ND6 171.70 1381.97
97. TCF12 ENSGALG00000004304 167.18 1345.59 transcription factor 12 [Source:NCBI gene;Acc:396334]
98. CDK1 ENSGALG00000003085 166.05 1336.49 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
99. SNRPE ENSGALG00000000137 164.92 1327.40 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
100. IGF2BP3 ENSGALG00000010961 163.79 1318.30 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA