Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s56.

Sample reads: 124,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5007.58 40309.00
2. MT-ATP6 MT-ATP6 4274.06 34404.46
3. MT-ND5 MT-ND5 3393.26 27314.37
4. MT-CYB MT-CYB 2206.34 17760.15
5. gga-mir-3527 gga-mir-3527 2122.59 17085.99
6. MT-CO1 MT-CO1 1721.18 13854.80
7. MT-ND4 MT-ND4 1705.29 13726.90
8. gga-mir-3533 ENSGALG00000027736 1624.43 13076.01 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. EEF1A EEF1A 1622.99 13064.41
10. MT-ND3 MT-ND3 1537.80 12378.67
11. GAPDH ENSGALG00000014442 1495.92 12041.55 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ND1 MT-ND1 1416.50 11402.25
13. PPIA ENSGALG00000028600 1241.79 9995.91 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 1035.30 8333.75 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 695.98 5602.36 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. MDK ENSGALG00000008367 681.54 5486.12 midkine [Source:NCBI gene;Acc:423196]
17. RPS6 ENSGALG00000015082 613.67 4939.80 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
18. RPS23 ENSGALG00000015617 599.24 4823.64 ribosomal protein S23
19. RPL15 ENSGALG00000011290 518.37 4172.67 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
20. RPL26 RPL26 466.39 3754.25
21. RPL8 ENSGALG00000016232 462.06 3719.40 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
22. MT-ND2 MT-ND2 459.17 3696.13
23. STMN1 ENSGALG00000001475 453.40 3649.69 stathmin 1 [Source:NCBI gene;Acc:396057]
24. RPS3 ENSGALG00000017330 444.73 3579.90 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
25. RPL23 ENSGALG00000001634 443.29 3568.31 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
26. RPS7 ENSGALG00000016392 420.19 3382.36 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
27. RPL7 ENSGALG00000035252 398.53 3208.01 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
28. RPS10 ENSGALG00000002813 397.08 3196.33 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
29. HBE 395.64 3184.74 hemoglobin subunit epsilon
30. EIF4G2 ENSGALG00000005587 385.53 3103.36 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
31. RPL7A ENSGALG00000003197 385.53 3103.36 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
32. TMSB4X ENSGALG00000026383 384.09 3091.77 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
33. RPL27A ENSGALG00000005948 382.64 3080.10 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
34. ENO1 ENSGALG00000002377 371.09 2987.12 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
35. CIRBP ENSGALG00000030918 368.20 2963.86 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
36. HBG1 HBG1 366.76 2952.27
37. ENSGALG00000018384 ENSGALG00000018384 365.32 2940.68
38. RPL18A 360.98 2905.74 ribosomal protein L18a
39. ENSGALG00000002696 ENSGALG00000002696 353.77 2847.71
40. ATP6V0C ENSGALG00000009229 342.21 2754.65 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
41. RPL31 ENSGALG00000016775 320.55 2580.30 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
42. ATP5G3 307.56 2475.73 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
43. RPL21 ENSGALG00000027035 304.67 2452.47 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
44. RPS27A ENSGALG00000036790 304.67 2452.47 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
45. RPS4 RPS4 303.23 2440.88
46. RPS16 ENSGALG00000026490 300.34 2417.62 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
47. RPS20 ENSGALG00000014432 288.79 2324.64 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
48. RPS29 ENSGALG00000012229 288.79 2324.64 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
49. FKBP4 ENSGALG00000014331 287.34 2312.97 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
50. EIF1 ENSGALG00000028517 281.57 2266.52 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
51. EEF1B2 ENSGALG00000008590 270.02 2173.55 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
52. ENSGALG00000018386 ENSGALG00000018386 270.02 2173.55
53. RAN ENSGALG00000002569 265.68 2138.62 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
54. H3-IX H3-IX 261.35 2103.76
55. CRHOA CRHOA 259.91 2092.17
56. ERH ENSGALG00000017384 259.91 2092.17 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
57. RPL37 ENSGALG00000014833 258.47 2080.58 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
58. RPS11 ENSGALG00000017299 257.02 2068.91 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
59. RPL35A ENSGALG00000007611, ENSGALG00000041230 255.58 2057.32 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
60. RPS24 ENSGALG00000004871 254.13 2045.64 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
61. RPS12 ENSGALG00000013990 252.69 2034.05 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
62. NDUFB9 ENSGALG00000042242 242.58 1952.67 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
63. RPL10A ENSGALG00000002644 241.14 1941.08 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
64. RPL36 ENSGALG00000000474 239.69 1929.41 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
65. RPSA 238.25 1917.82 ribosomal protein SA
66. ALDH1A2 ENSGALG00000004270 236.81 1906.22 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
67. SNRPG ENSGALG00000028409 236.81 1906.22 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
68. RPS15A ENSGALG00000006771 235.36 1894.55 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
69. BTF3L4 ENSGALG00000010570 233.92 1882.96 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
70. TXN ENSGALG00000015704 233.92 1882.96 thioredoxin [Source:NCBI gene;Acc:396437]
71. RPL12 ENSGALG00000008806 232.47 1871.29 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
72. ENSGALG00000028992 ENSGALG00000028992 228.14 1836.43
73. ANP32B ENSGALG00000037483 226.70 1824.84 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
74. HBZ ENSGALG00000023740 225.25 1813.17 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
75. H2AFZ ENSGALG00000014023 220.92 1778.32 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
76. RPL27 ENSGALG00000002837 219.48 1766.73 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
77. RPS14 ENSGALG00000004588 219.48 1766.73 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
78. RPS15 ENSGALG00000015195 219.48 1766.73 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
79. RPS8 ENSGALG00000010124 216.59 1743.46 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
80. SLC25A6_1 ENSGALG00000016691 216.59 1743.46 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
81. RPL38 ENSGALG00000001465 213.70 1720.20 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
82. MIF ENSGALG00000006326 212.26 1708.61 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
83. KPNA2 ENSGALG00000003584 206.48 1662.08 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
84. RPL32 ENSGALG00000027142 206.48 1662.08 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
85. EIF3F ENSGALG00000005326 199.26 1603.96 eukaryotic translation initiation factor 3 subunit F
86. HNRNPDL ENSGALG00000023199 194.93 1569.11 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
87. HMGN2 HMGN2 193.49 1557.52
88. RPLP1 ENSGALG00000030878 193.49 1557.52 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
89. RPS3A ENSGALG00000010077 193.49 1557.52 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
90. COX7C ENSGALG00000027963 190.60 1534.25 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
91. HMGN5 ENSGALG00000007131 189.16 1522.66 high mobility group nucleosome binding domain 5, transcript variant X1
92. ATP6V1G1 ENSGALG00000007190 184.82 1487.73 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
93. RPL23A ENSGALG00000003966 183.38 1476.13 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
94. RPL6 ENSGALG00000004818 181.94 1464.54 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
95. TPT1 ENSGALG00000028872 181.94 1464.54 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
96. MEIS2 ENSGALG00000039118 180.49 1452.87 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
97. RPL14 ENSGALG00000043379 180.49 1452.87 ribosomal protein L14
98. TCEB3 ENSGALG00000034625 179.05 1441.28 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
99. LDHB ENSGALG00000035836 177.60 1429.61 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
100. RPS21 ENSGALG00000005338 177.60 1429.61 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA