Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s51.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5919.29 47649.92
2. MT-ATP6 MT-ATP6 4535.98 36514.36
3. MT-ND5 MT-ND5 4288.54 34522.48
4. MT-CYB MT-CYB 2471.46 19895.10
5. MT-ND4 MT-ND4 2186.75 17603.20
6. gga-mir-3533 ENSGALG00000027736 2071.97 16679.23 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. gga-mir-3527 gga-mir-3527 1978.06 15923.26
8. MT-CO1 MT-CO1 1958.69 15767.33
9. EEF1A EEF1A 1700.81 13691.42
10. MT-ND3 MT-ND3 1665.03 13403.39
11. MT-ND1 MT-ND1 1377.34 11087.50
12. GAPDH ENSGALG00000014442 1293.87 10415.57 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. MDK ENSGALG00000008367 1079.22 8687.65 midkine [Source:NCBI gene;Acc:423196]
14. PPIA ENSGALG00000028600 1074.74 8651.59 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
15. NME2 ENSGALG00000002932 708.05 5699.76 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. RPL5 ENSGALG00000005922 702.09 5651.78 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. RPS23 ENSGALG00000015617 648.42 5219.74 ribosomal protein S23
18. RPS6 ENSGALG00000015082 575.38 4631.77 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. ATP6V0C ENSGALG00000009229 509.79 4103.78 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
20. TMSB4X ENSGALG00000026383 469.55 3779.85 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
21. RPL8 ENSGALG00000016232 466.57 3755.86 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
22. RPS7 ENSGALG00000016392 454.64 3659.82 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
23. RPL15 ENSGALG00000011290 448.68 3611.85 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
24. EIF4G2 ENSGALG00000005587 433.77 3491.82 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
25. RPL26 RPL26 430.79 3467.83
26. RPS3 ENSGALG00000017330 408.43 3287.84 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
27. RPL27A ENSGALG00000005948 390.54 3143.82 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. ENO1 ENSGALG00000002377 389.05 3131.83 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
29. STMN1 ENSGALG00000001475 381.60 3071.86 stathmin 1 [Source:NCBI gene;Acc:396057]
30. MT-ND2 MT-ND2 359.24 2891.86
31. RPL7A ENSGALG00000003197 357.75 2879.87 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
32. ENSGALG00000002696 ENSGALG00000002696 353.28 2843.88
33. ENSGALG00000018384 ENSGALG00000018384 341.35 2747.85
34. RPL7 ENSGALG00000035252 338.37 2723.86 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
35. RPS10 ENSGALG00000002813 336.88 2711.86 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
36. EIF1 ENSGALG00000028517 332.41 2675.88 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
37. RPS4 RPS4 327.94 2639.90
38. RPS27A ENSGALG00000036790 320.49 2579.92 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
39. CIRBP ENSGALG00000030918 318.99 2567.85 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
40. RPL23 ENSGALG00000001634 316.01 2543.86 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
41. CRHOA CRHOA 311.54 2507.88
42. LUM ENSGALG00000011271 298.13 2399.93 lumican [Source:NCBI gene;Acc:417891]
43. RPL31 ENSGALG00000016775 298.13 2399.93 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
44. ALDH1A2 ENSGALG00000004270 296.64 2387.93 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
45. RPL18A 292.16 2351.87 ribosomal protein L18a
46. ENSGALG00000028992 ENSGALG00000028992 284.71 2291.90
47. RPL35A ENSGALG00000007611, ENSGALG00000041230 260.86 2099.91 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
48. RAN ENSGALG00000002569 256.39 2063.92 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
49. RPS16 ENSGALG00000026490 254.90 2051.93 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
50. ATP5G3 251.92 2027.94 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
51. RPL37 ENSGALG00000014833 248.93 2003.87 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
52. ENSGALG00000018386 ENSGALG00000018386 247.44 1991.88
53. EEF1B2 ENSGALG00000008590 244.46 1967.89 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
54. RPL27 ENSGALG00000002837 239.99 1931.90 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
55. RPS20 ENSGALG00000014432 239.99 1931.90 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
56. ERH ENSGALG00000017384 237.01 1907.92 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
57. RPLP1 ENSGALG00000030878 235.52 1895.92 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
58. RPS12 ENSGALG00000013990 229.56 1847.94 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
59. RPS8 ENSGALG00000010124 229.56 1847.94 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
60. NONO ENSGALG00000005507 226.58 1823.96 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
61. RPS24 ENSGALG00000004871 226.58 1823.96 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
62. H3-IX H3-IX 225.08 1811.88
63. RPS15A ENSGALG00000006771 222.10 1787.89 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
64. RPSA 222.10 1787.89 ribosomal protein SA
65. SNRPG ENSGALG00000028409 222.10 1787.89 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
66. NDUFB9 ENSGALG00000042242 220.61 1775.90 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
67. RPL32 ENSGALG00000027142 220.61 1775.90 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
68. RPL36 ENSGALG00000000474 220.61 1775.90 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
69. RPL10A ENSGALG00000002644 217.63 1751.91 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
70. RPL12 ENSGALG00000008806 217.63 1751.91 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
71. RPL38 ENSGALG00000001465 217.63 1751.91 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
72. RPS29 ENSGALG00000012229 217.63 1751.91 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
73. ANP32B ENSGALG00000037483 208.69 1679.94 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
74. C5ORF13 C5ORF13 208.69 1679.94
75. SLC25A6_1 ENSGALG00000016691 208.69 1679.94 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
76. RPS11 ENSGALG00000017299 205.71 1655.95 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
77. TXN ENSGALG00000015704 205.71 1655.95 thioredoxin [Source:NCBI gene;Acc:396437]
78. MEIS2 ENSGALG00000039118 204.22 1643.96 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
79. RPL21 ENSGALG00000027035 204.22 1643.96 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
80. FKBP4 ENSGALG00000014331 202.73 1631.96 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
81. ATP6V1G1 ENSGALG00000007190 199.74 1607.89 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
82. CNN3 ENSGALG00000005597 198.25 1595.90 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
83. MT-ND6 MT-ND6 198.25 1595.90
84. RPS14 ENSGALG00000004588 198.25 1595.90 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
85. HNRNPDL ENSGALG00000023199 196.76 1583.91 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
86. RPS3A ENSGALG00000010077 196.76 1583.91 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
87. BTF3L4 ENSGALG00000010570 192.29 1547.92 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
88. CALM CALM 192.29 1547.92
89. RPL29 ENSGALG00000026978 192.29 1547.92 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
90. TPT1 ENSGALG00000028872 184.84 1487.95 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
91. RPL3 ENSGALG00000012172 180.37 1451.97 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
92. RPL14 ENSGALG00000043379 177.38 1427.90 ribosomal protein L14
93. EEF1D 175.89 1415.90 eukaryotic translation elongation factor 1 delta, transcript variant X13
94. COL1A2 ENSGALG00000009641 172.91 1391.91 collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]
95. H2AFZ ENSGALG00000014023 171.42 1379.92 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
96. PNRC1 ENSGALG00000015780 171.42 1379.92 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
97. RPL4 ENSGALG00000007711 171.42 1379.92 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
98. TCF12 ENSGALG00000004304 168.44 1355.93 transcription factor 12 [Source:NCBI gene;Acc:396334]
99. RPS15 ENSGALG00000015195 165.46 1331.94 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
100. SNRPE ENSGALG00000000137 165.46 1331.94 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA