Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s50.

Sample reads: 124,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 6637.15 53427.91
2. MT-CO3 MT-CO3 6323.29 50901.40
3. MT-ND5 MT-ND5 5647.09 45458.10
4. MT-CYB MT-CYB 3212.54 25860.39
5. MT-ND4 MT-ND4 2879.29 23177.79
6. gga-mir-3527 gga-mir-3527 2307.31 18573.45
7. gga-mir-3533 ENSGALG00000027736 2303.68 18544.23 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. MT-ND3 MT-ND3 2084.34 16778.58
9. MT-ND1 MT-ND1 2066.16 16632.23
10. MT-CO1 MT-CO1 2009.20 16173.71
11. EEF1A EEF1A 1594.76 12837.54
12. GAPDH ENSGALG00000014442 1301.50 10476.85 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. PPIA ENSGALG00000028600 1000.97 8057.64 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. MDK ENSGALG00000008367 999.75 8047.82 midkine [Source:NCBI gene;Acc:423196]
15. NME2 ENSGALG00000002932 786.47 6330.95 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. RPS23 ENSGALG00000015617 747.69 6018.78 ribosomal protein S23
17. RPL5 ENSGALG00000005922 728.31 5862.77 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. RPL15 ENSGALG00000011290 608.34 4897.03 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. RPS6 ENSGALG00000015082 473.82 3814.17 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
20. STMN1 ENSGALG00000001475 471.40 3794.69 stathmin 1 [Source:NCBI gene;Acc:396057]
21. RPS3 ENSGALG00000017330 470.19 3784.95 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
22. RPL26 RPL26 436.26 3511.82
23. ATP6V0C ENSGALG00000009229 427.77 3443.47 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
24. RPL8 ENSGALG00000016232 418.08 3365.47 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
25. RPS7 ENSGALG00000016392 396.27 3189.91 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
26. TMSB4X ENSGALG00000026383 387.78 3121.56 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
27. MT-ND2 MT-ND2 367.18 2955.74
28. ENO1 ENSGALG00000002377 362.34 2916.77 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
29. RPL27A ENSGALG00000005948 350.22 2819.21 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. RPL7A ENSGALG00000003197 349.00 2809.39 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. RPL23 ENSGALG00000001634 347.79 2799.65 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
32. EIF4G2 ENSGALG00000005587 342.95 2760.69 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
33. ENSGALG00000002696 ENSGALG00000002696 342.95 2760.69
34. RPL31 ENSGALG00000016775 334.46 2692.35 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
35. RPL7 ENSGALG00000035252 329.62 2653.38 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
36. RPS27A ENSGALG00000036790 327.19 2633.82 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
37. CIRBP ENSGALG00000030918 310.23 2497.30 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
38. ALDH1A2 ENSGALG00000004270 306.59 2468.00 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
39. EIF1 ENSGALG00000028517 282.35 2272.87 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
40. CRHOA CRHOA 279.93 2253.39
41. ENSGALG00000028992 ENSGALG00000028992 278.72 2243.65
42. RPS10 ENSGALG00000002813 278.72 2243.65 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
43. RPS20 ENSGALG00000014432 273.87 2204.61 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
44. RPL18A 272.66 2194.87 ribosomal protein L18a
45. NDUFB9 ENSGALG00000042242 266.60 2146.08 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
46. LUM ENSGALG00000011271 262.97 2116.86 lumican [Source:NCBI gene;Acc:417891]
47. ENSGALG00000018384 ENSGALG00000018384 260.54 2097.30
48. EEF1B2 ENSGALG00000008590 255.69 2058.26 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
49. RPS4 RPS4 254.48 2048.52
50. RPS16 ENSGALG00000026490 252.06 2029.04 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
51. ATP5G3 249.64 2009.56 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
52. RPL36 ENSGALG00000000474 238.73 1921.74 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
53. RPS12 ENSGALG00000013990 235.09 1892.43 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
54. FKBP4 ENSGALG00000014331 227.82 1833.91 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
55. RPL32 ENSGALG00000027142 226.61 1824.17 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
56. RPS29 ENSGALG00000012229 226.61 1824.17 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
57. RPS3A ENSGALG00000010077 225.40 1814.43 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
58. RPL21 ENSGALG00000027035 222.98 1794.95 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
59. RPS15A ENSGALG00000006771 221.76 1785.13 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
60. RPS8 ENSGALG00000010124 221.76 1785.13 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
61. RPL35A ENSGALG00000007611, ENSGALG00000041230 220.55 1775.39 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
62. RPS14 ENSGALG00000004588 218.13 1755.91 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
63. RPS24 ENSGALG00000004871 218.13 1755.91 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
64. COX7C ENSGALG00000027963 215.70 1736.35 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
65. RPL38 ENSGALG00000001465 213.28 1716.87 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
66. TXN ENSGALG00000015704 210.86 1697.39 thioredoxin [Source:NCBI gene;Acc:396437]
67. RPS15 ENSGALG00000015195 209.65 1687.65 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
68. RPL37 ENSGALG00000014833 208.43 1677.83 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
69. RPL27 ENSGALG00000002837 203.59 1638.86 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
70. ENSGALG00000018386 ENSGALG00000018386 202.37 1629.04
71. MEIS2 ENSGALG00000039118 201.16 1619.30 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
72. RPS11 ENSGALG00000017299 201.16 1619.30 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
73. RPL10A ENSGALG00000002644 199.95 1609.56 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
74. RAN ENSGALG00000002569 198.74 1599.82 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
75. HNRNPDL ENSGALG00000023199 196.32 1580.34 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
76. RPL6 ENSGALG00000004818 196.32 1580.34 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
77. RPSA 196.32 1580.34 ribosomal protein SA
78. SLC25A6_1 ENSGALG00000016691 195.10 1570.52 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
79. SNRPG ENSGALG00000028409 192.68 1551.04 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
80. RPL12 ENSGALG00000008806 190.26 1531.56 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
81. TPT1 ENSGALG00000028872 189.04 1521.74 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
82. RPLP1 ENSGALG00000030878 186.62 1502.26 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
83. C5ORF13 C5ORF13 184.20 1482.78
84. RPL29 ENSGALG00000026978 181.77 1463.22 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
85. RPL3 ENSGALG00000012172 179.35 1443.74 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
86. RPL14 ENSGALG00000043379 178.14 1434.00 ribosomal protein L14
87. COL1A2 ENSGALG00000009641 173.29 1394.95 collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]
88. PNRC1 ENSGALG00000015780 173.29 1394.95 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
89. RPL4 ENSGALG00000007711 173.29 1394.95 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
90. RPL23A ENSGALG00000003966 170.87 1375.47 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
91. RPS21 ENSGALG00000005338 170.87 1375.47 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
92. TCF12 ENSGALG00000004304 170.87 1375.47 transcription factor 12 [Source:NCBI gene;Acc:396334]
93. YWHAZ ENSGALG00000031387 168.44 1355.91 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
94. EIF3F ENSGALG00000005326 163.60 1316.95 eukaryotic translation initiation factor 3 subunit F
95. RPL37A ENSGALG00000011472 162.38 1307.13 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
96. ANP32B ENSGALG00000037483 161.17 1297.39 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
97. ERH ENSGALG00000017384 161.17 1297.39 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
98. H3-IX H3-IX 161.17 1297.39
99. KPNA2 ENSGALG00000003584 161.17 1297.39 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
100. COX6A1 ENSGALG00000007205 159.96 1287.65 cytochrome c oxidase subunit 6A1 [Source:NCBI gene;Acc:416978]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA