Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s49.

Sample reads: 124,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 7065.84 56879.09
2. MT-CO3 MT-CO3 6266.51 50444.59
3. MT-ND5 MT-ND5 5569.23 44831.58
4. MT-CYB MT-CYB 3183.47 25626.52
5. MT-ND4 MT-ND4 2242.06 18048.29
6. gga-mir-3527 gga-mir-3527 2128.57 17134.71
7. MT-CO1 MT-CO1 1993.85 16050.23
8. MT-ND3 MT-ND3 1861.58 14985.48
9. EEF1A EEF1A 1666.44 13414.63
10. gga-mir-3533 ENSGALG00000027736 1628.07 13105.75 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. MT-ND1 MT-ND1 1589.69 12796.80
12. GAPDH ENSGALG00000014442 1205.95 9707.74 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. MDK ENSGALG00000008367 999.37 8044.80 midkine [Source:NCBI gene;Acc:423196]
14. PPIA ENSGALG00000028600 919.36 7400.73 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
15. NME2 ENSGALG00000002932 832.00 6697.49 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. RPS23 ENSGALG00000015617 631.14 5080.59 ribosomal protein S23
17. RPL5 ENSGALG00000005922 605.83 4876.85 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. ATP6V0C ENSGALG00000009229 600.93 4837.41 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
19. RPS6 ENSGALG00000015082 536.43 4318.19 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
20. TMSB4X ENSGALG00000026383 460.50 3706.97 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
21. RPS3 ENSGALG00000017330 453.96 3654.32 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
22. EIF4G2 ENSGALG00000005587 444.98 3582.03 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
23. STMN1 ENSGALG00000001475 415.59 3345.45 stathmin 1 [Source:NCBI gene;Acc:396057]
24. RPL8 ENSGALG00000016232 411.51 3312.60 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
25. RPL15 ENSGALG00000011290 406.61 3273.16 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
26. RPL7A ENSGALG00000003197 368.23 2964.20 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
27. RPL26 RPL26 360.07 2898.52
28. RPS27A ENSGALG00000036790 355.99 2865.67 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
29. RPS7 ENSGALG00000016392 351.90 2832.75 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
30. ENO1 ENSGALG00000002377 347.01 2793.39 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
31. LUM ENSGALG00000011271 335.57 2701.29 lumican [Source:NCBI gene;Acc:417891]
32. CIRBP ENSGALG00000030918 329.86 2655.33 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
33. RPL7 ENSGALG00000035252 326.59 2629.01 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
34. MT-ND2 MT-ND2 324.14 2609.28
35. RPS10 ENSGALG00000002813 304.55 2451.59 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
36. ALDH1A2 ENSGALG00000004270 302.10 2431.87 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
37. MEIS2 ENSGALG00000039118 288.22 2320.13 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
38. RPL18A 287.40 2313.53 ribosomal protein L18a
39. ENSGALG00000002696 ENSGALG00000002696 286.59 2307.01
40. FKBP4 ENSGALG00000014331 281.69 2267.57 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
41. RPS4 RPS4 280.87 2260.97
42. RPL23 ENSGALG00000001634 276.79 2228.12 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
43. RPL27A ENSGALG00000005948 271.89 2188.68 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
44. RPL31 ENSGALG00000016775 270.26 2175.56 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
45. EEF1B2 ENSGALG00000008590 268.62 2162.36 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
46. CRHOA CRHOA 267.81 2155.84
47. RPS12 ENSGALG00000013990 264.54 2129.51 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
48. RPS16 ENSGALG00000026490 258.83 2083.55 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
49. RPS20 ENSGALG00000014432 258.01 2076.95 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
50. RPL37 ENSGALG00000014833 250.66 2017.78 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
51. EIF1 ENSGALG00000028517 249.84 2011.18 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
52. ENSGALG00000018384 ENSGALG00000018384 234.33 1886.33
53. SLC25A6_1 ENSGALG00000016691 234.33 1886.33 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
54. H3-IX H3-IX 227.80 1833.76
55. TXN ENSGALG00000015704 225.35 1814.04 thioredoxin [Source:NCBI gene;Acc:396437]
56. RPS8 ENSGALG00000010124 224.53 1807.44 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
57. C5ORF13 C5ORF13 221.27 1781.19
58. RPL36 ENSGALG00000000474 218.00 1754.87 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
59. NDUFB9 ENSGALG00000042242 215.55 1735.15 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
60. RPS14 ENSGALG00000004588 215.55 1735.15 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
61. RPL38 ENSGALG00000001465 211.47 1702.31 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
62. RPS15A ENSGALG00000006771 210.65 1695.71 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
63. ATP5G3 209.84 1689.18 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
64. RPL12 ENSGALG00000008806 209.84 1689.18 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
65. RPL21 ENSGALG00000027035 207.39 1669.46 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
66. RPS29 ENSGALG00000012229 206.57 1662.86 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
67. RPL35A ENSGALG00000007611, ENSGALG00000041230 204.94 1649.74 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
68. RPL27 ENSGALG00000002837 204.12 1643.14 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
69. ENSGALG00000028992 ENSGALG00000028992 203.30 1636.54
70. EIF3F ENSGALG00000005326 201.67 1623.42 eukaryotic translation initiation factor 3 subunit F
71. ENSGALG00000018386 ENSGALG00000018386 200.85 1616.82
72. RPL32 ENSGALG00000027142 200.04 1610.30 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
73. RPS24 ENSGALG00000004871 200.04 1610.30 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
74. RPL10A ENSGALG00000002644 195.14 1570.85 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
75. COL1A2 ENSGALG00000009641 193.51 1557.73 collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]
76. RPL29 ENSGALG00000026978 190.24 1531.41 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
77. RPSA 186.97 1505.08 ribosomal protein SA
78. SNRPG ENSGALG00000028409 184.53 1485.44 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
79. RPLP1 ENSGALG00000030878 182.89 1472.24 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
80. CALM CALM 181.26 1459.12
81. HNRNPA3 ENSGALG00000009250 181.26 1459.12 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
82. LDHB ENSGALG00000035836 181.26 1459.12 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
83. ANP32B ENSGALG00000037483 180.44 1452.52 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
84. TPT1 ENSGALG00000028872 179.63 1446.00 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
85. RAN ENSGALG00000002569 177.18 1426.28 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
86. HNRNPDL ENSGALG00000023199 173.91 1399.95 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
87. RPL14 ENSGALG00000043379 173.91 1399.95 ribosomal protein L14
88. RPS15 ENSGALG00000015195 173.91 1399.95 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
89. RPL6 ENSGALG00000004818 173.09 1393.35 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
90. RPS11 ENSGALG00000017299 170.64 1373.63 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
91. YWHAZ ENSGALG00000031387 170.64 1373.63 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
92. PNRC1 ENSGALG00000015780 169.01 1360.51 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
93. PDIA6 ENSGALG00000016447 161.66 1301.34 protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168]
94. COX7C ENSGALG00000027963 160.03 1288.22 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
95. IGF2BP3 ENSGALG00000010961 159.21 1281.62 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
96. RPS3A ENSGALG00000010077 158.40 1275.10 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
97. EEF1D 157.58 1268.50 eukaryotic translation elongation factor 1 delta, transcript variant X13
98. H2AFZ ENSGALG00000014023 157.58 1268.50 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
99. TCF12 ENSGALG00000004304 155.13 1248.78 transcription factor 12 [Source:NCBI gene;Acc:396334]
100. CNN3 ENSGALG00000005597 154.32 1242.26 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA