Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s47.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5634.99 45357.62
2. MT-ATP6 MT-ATP6 3878.42 31218.49
3. MT-ND5 MT-ND5 3316.71 26697.13
4. MT-CYB MT-CYB 2306.92 18569.05
5. MT-ND3 MT-ND3 2030.93 16347.53
6. EEF1A EEF1A 1977.36 15916.33
7. MT-CO1 MT-CO1 1852.36 14910.17
8. gga-mir-3533 ENSGALG00000027736 1813.39 14596.49 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. MT-ND4 MT-ND4 1759.82 14165.29
10. gga-mir-3527 gga-mir-3527 1672.15 13459.61
11. GAPDH ENSGALG00000014442 1199.73 9656.96 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ND1 MT-ND1 1058.49 8520.08
13. MDK ENSGALG00000008367 853.93 6873.52 midkine [Source:NCBI gene;Acc:423196]
14. NME2 ENSGALG00000002932 836.08 6729.84 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. PPIA ENSGALG00000028600 795.49 6403.12 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. RPS23 ENSGALG00000015617 709.45 5710.56 ribosomal protein S23
17. RPL5 ENSGALG00000005922 685.10 5514.56 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. RPS6 ENSGALG00000015082 543.86 4377.68 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. ATP6V0C ENSGALG00000009229 540.61 4351.52 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
20. TMSB4X ENSGALG00000026383 519.50 4181.60 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
21. EIF4G2 ENSGALG00000005587 506.52 4077.12 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
22. RPS3 ENSGALG00000017330 480.54 3868.00 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
23. RPL8 ENSGALG00000016232 439.95 3541.28 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
24. STMN1 ENSGALG00000001475 422.10 3397.60 stathmin 1 [Source:NCBI gene;Acc:396057]
25. LUM ENSGALG00000011271 410.73 3306.08 lumican [Source:NCBI gene;Acc:417891]
26. RPL26 RPL26 394.50 3175.44
27. ENO1 ENSGALG00000002377 388.00 3123.12 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
28. RPL7A ENSGALG00000003197 384.76 3097.04 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
29. ENSGALG00000002696 ENSGALG00000002696 378.26 3044.72
30. RPS10 ENSGALG00000002813 365.28 2940.24 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
31. RPS7 ENSGALG00000016392 360.41 2901.04 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
32. RPL7 ENSGALG00000035252 342.55 2757.28 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
33. TXN ENSGALG00000015704 342.55 2757.28 thioredoxin [Source:NCBI gene;Acc:396437]
34. RPL23 ENSGALG00000001634 336.05 2704.96 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
35. CIRBP ENSGALG00000030918 331.18 2665.76 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
36. RPL18A 326.31 2626.56 ribosomal protein L18a
37. RPL27A ENSGALG00000005948 311.70 2508.96 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
38. RPL15 ENSGALG00000011290 310.08 2495.92 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
39. CRHOA CRHOA 303.58 2443.60
40. ENSGALG00000018384 ENSGALG00000018384 303.58 2443.60
41. H3-IX H3-IX 295.47 2378.32
42. RPS12 ENSGALG00000013990 292.22 2352.16 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
43. ENSGALG00000028992 ENSGALG00000028992 288.97 2326.00
44. MT-ND2 MT-ND2 288.97 2326.00
45. RPS4 RPS4 288.97 2326.00
46. RPL21 ENSGALG00000027035 277.61 2234.56 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
47. ALDH1A2 ENSGALG00000004270 275.99 2221.52 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
48. EEF1B2 ENSGALG00000008590 274.36 2208.40 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
49. MEIS2 ENSGALG00000039118 256.50 2064.64 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
50. RPS27A ENSGALG00000036790 253.26 2038.56 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
51. RPS16 ENSGALG00000026490 251.63 2025.44 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
52. FKBP4 ENSGALG00000014331 250.01 2012.40 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
53. RPL37 ENSGALG00000014833 250.01 2012.40 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
54. RPL31 ENSGALG00000016775 245.14 1973.20 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
55. TCF12 ENSGALG00000004304 240.27 1934.00 transcription factor 12 [Source:NCBI gene;Acc:396334]
56. RPL35A ENSGALG00000007611, ENSGALG00000041230 238.65 1920.96 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
57. RPS20 ENSGALG00000014432 238.65 1920.96 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
58. RAN ENSGALG00000002569 237.02 1907.84 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
59. RPSA 237.02 1907.84 ribosomal protein SA
60. RPS24 ENSGALG00000004871 235.40 1894.80 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
61. RPL38 ENSGALG00000001465 232.15 1868.64 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
62. RPL32 ENSGALG00000027142 230.53 1855.60 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
63. SLC25A6_1 ENSGALG00000016691 230.53 1855.60 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
64. ATP5G3 224.04 1803.36 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
65. RPL29 ENSGALG00000026978 222.41 1790.24 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
66. C5ORF13 C5ORF13 220.79 1777.20
67. NDUFB9 ENSGALG00000042242 219.17 1764.16 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
68. RPL27 ENSGALG00000002837 219.17 1764.16 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
69. RPS29 ENSGALG00000012229 212.67 1711.84 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
70. RPS15A ENSGALG00000006771 211.05 1698.80 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
71. ENSGALG00000018386 ENSGALG00000018386 209.42 1685.68
72. SNRPG ENSGALG00000028409 209.42 1685.68 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
73. RPL10A ENSGALG00000002644 204.55 1646.48 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
74. RPS14 ENSGALG00000004588 202.93 1633.44 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
75. RPL12 ENSGALG00000008806 201.31 1620.40 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
76. RPLP1 ENSGALG00000030878 201.31 1620.40 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
77. CALM CALM 199.68 1607.28
78. HNRNPDL ENSGALG00000023199 199.68 1607.28 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
79. EIF1 ENSGALG00000028517 191.57 1542.00 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
80. ERH ENSGALG00000017384 189.94 1528.88 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
81. TPT1 ENSGALG00000028872 189.94 1528.88 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
82. COX7C ENSGALG00000027963 185.07 1489.68 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
83. RPS11 ENSGALG00000017299 185.07 1489.68 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
84. BTF3L4 ENSGALG00000010570 183.45 1476.64 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
85. RPL14 ENSGALG00000043379 183.45 1476.64 ribosomal protein L14
86. RPL3 ENSGALG00000012172 181.83 1463.60 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
87. RPS3A ENSGALG00000010077 181.83 1463.60 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
88. RPL6 ENSGALG00000004818 180.20 1450.48 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
89. RPS8 ENSGALG00000010124 178.58 1437.44 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
90. KPNA2 ENSGALG00000003584 176.96 1424.40 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
91. COL1A2 ENSGALG00000009641 175.33 1411.28 collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]
92. H2AFZ ENSGALG00000014023 175.33 1411.28 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
93. RPL36 ENSGALG00000000474 173.71 1398.24 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
94. CNN3 ENSGALG00000005597 172.09 1385.20 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
95. EIF3F ENSGALG00000005326 170.46 1372.08 eukaryotic translation initiation factor 3 subunit F
96. PNRC1 ENSGALG00000015780 170.46 1372.08 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
97. ARF4 ENSGALG00000005622 168.84 1359.04 ADP ribosylation factor 4 [Source:HGNC Symbol;Acc:HGNC:655]
98. ATP6V1G1 ENSGALG00000007190 168.84 1359.04 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
99. HNRNPA3 ENSGALG00000009250 168.84 1359.04 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
100. RPL4 ENSGALG00000007711 168.84 1359.04 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA