Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s46.

Sample reads: 124,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6350.90 51119.58
2. MT-ND5 MT-ND5 4779.39 38470.20
3. MT-ATP6 MT-ATP6 4401.20 35426.08
4. MT-CYB MT-CYB 2631.42 21180.79
5. MT-ND4 MT-ND4 2277.71 18333.71
6. gga-mir-3533 ENSGALG00000027736 2247.11 18087.41 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. gga-mir-3527 gga-mir-3527 2065.97 16629.38
8. MT-CO1 MT-CO1 1861.58 14984.21
9. EEF1A EEF1A 1745.30 14048.25
10. MT-ND3 MT-ND3 1511.54 12166.67
11. MT-ND1 MT-ND1 1369.56 11023.84
12. GAPDH ENSGALG00000014442 1152.93 9280.15 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. PPIA ENSGALG00000028600 1036.66 8344.27 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. MDK ENSGALG00000008367 927.73 7467.47 midkine [Source:NCBI gene;Acc:423196]
15. RPL5 ENSGALG00000005922 668.26 5378.95 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. NME2 ENSGALG00000002932 638.88 5142.46 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
17. RPS23 ENSGALG00000015617 631.54 5083.38 ribosomal protein S23
18. RPS6 ENSGALG00000015082 532.40 4285.39 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. TMSB4X ENSGALG00000026383 495.69 3989.90 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
20. ATP6V0C ENSGALG00000009229 472.43 3802.68 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
21. RPS3 ENSGALG00000017330 444.28 3576.09 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
22. RPS7 ENSGALG00000016392 434.49 3497.29 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
23. RPL8 ENSGALG00000016232 421.03 3388.95 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
24. RPL15 ENSGALG00000011290 418.58 3369.23 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
25. EIF4G2 ENSGALG00000005587 403.89 3250.99 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
26. ENO1 ENSGALG00000002377 391.65 3152.46 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
27. RPL7 ENSGALG00000035252 384.31 3093.38 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
28. RPL26 RPL26 379.41 3053.94
29. RPL27A ENSGALG00000005948 370.85 2985.04 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. RPL7A ENSGALG00000003197 359.83 2896.34 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. MT-ND2 MT-ND2 358.61 2886.52
32. RPS4 RPS4 350.04 2817.54
33. RPL23 ENSGALG00000001634 339.02 2728.84 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
34. STMN1 ENSGALG00000001475 336.58 2709.20 stathmin 1 [Source:NCBI gene;Acc:396057]
35. ENSGALG00000002696 ENSGALG00000002696 331.68 2669.75
36. CIRBP ENSGALG00000030918 321.89 2590.95 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
37. RPL31 ENSGALG00000016775 319.44 2571.23 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
38. RPS10 ENSGALG00000002813 316.99 2551.51 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
39. CRHOA CRHOA 309.65 2492.43
40. EIF1 ENSGALG00000028517 309.65 2492.43 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
41. RPS27A ENSGALG00000036790 296.19 2384.09 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
42. LUM ENSGALG00000011271 291.29 2344.65 lumican [Source:NCBI gene;Acc:417891]
43. RPL18A 285.17 2295.39 ribosomal protein L18a
44. RPS16 ENSGALG00000026490 277.83 2236.31 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
45. ENSGALG00000018384 ENSGALG00000018384 269.26 2167.32
46. MEIS2 ENSGALG00000039118 263.14 2118.06 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
47. NDUFB9 ENSGALG00000042242 263.14 2118.06 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
48. EEF1B2 ENSGALG00000008590 258.25 2078.70 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
49. RPS11 ENSGALG00000017299 250.90 2019.54 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
50. ATP5G3 249.68 2009.72 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
51. CNN3 ENSGALG00000005597 249.68 2009.72 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
52. RPS20 ENSGALG00000014432 248.45 1999.82 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
53. H3-IX H3-IX 244.78 1970.28
54. RPL21 ENSGALG00000027035 237.44 1911.20 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
55. SLC25A6_1 ENSGALG00000016691 237.44 1911.20 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
56. TXN ENSGALG00000015704 237.44 1911.20 thioredoxin [Source:NCBI gene;Acc:396437]
57. RPS12 ENSGALG00000013990 236.22 1901.38 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
58. RPLP1 ENSGALG00000030878 227.65 1832.40 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
59. ENSGALG00000028992 ENSGALG00000028992 223.98 1802.86
60. FKBP4 ENSGALG00000014331 223.98 1802.86 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
61. RPL10A ENSGALG00000002644 222.75 1792.96 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
62. RPL35A ENSGALG00000007611, ENSGALG00000041230 221.53 1783.14 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
63. RPSA 221.53 1783.14 ribosomal protein SA
64. RPS3A ENSGALG00000010077 215.41 1733.88 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
65. RPL36 ENSGALG00000000474 214.19 1724.06 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
66. RPL37 ENSGALG00000014833 211.74 1704.33 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
67. RPS24 ENSGALG00000004871 209.29 1684.61 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
68. RPS15A ENSGALG00000006771 206.84 1664.89 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
69. RPS8 ENSGALG00000010124 206.84 1664.89 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
70. ENSGALG00000018386 ENSGALG00000018386 199.50 1605.81
71. RPL27 ENSGALG00000002837 198.27 1595.91 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
72. ALDH1A2 ENSGALG00000004270 195.83 1576.27 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
73. TPT1 ENSGALG00000028872 194.60 1566.37 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
74. RPS29 ENSGALG00000012229 192.15 1546.65 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
75. SNRPG ENSGALG00000028409 190.93 1536.83 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
76. RPL14 ENSGALG00000043379 189.71 1527.01 ribosomal protein L14
77. ERH ENSGALG00000017384 186.04 1497.47 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
78. RPL23A ENSGALG00000003966 186.04 1497.47 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
79. RPL38 ENSGALG00000001465 184.81 1487.57 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
80. C5ORF13 C5ORF13 183.59 1477.75
81. PDIA6 ENSGALG00000016447 183.59 1477.75 protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168]
82. RPL32 ENSGALG00000027142 182.36 1467.85 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
83. RPL12 ENSGALG00000008806 181.14 1458.03 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
84. ANP32B ENSGALG00000037483 179.92 1448.21 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
85. PNRC1 ENSGALG00000015780 179.92 1448.21 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
86. EIF3F ENSGALG00000005326 177.47 1428.49 eukaryotic translation initiation factor 3 subunit F
87. RPS14 ENSGALG00000004588 176.24 1418.59 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
88. COL1A2 ENSGALG00000009641 173.80 1398.95 collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]
89. CALM CALM 172.57 1389.05
90. RPS15 ENSGALG00000015195 172.57 1389.05 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
91. RPS21 ENSGALG00000005338 171.35 1379.23 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
92. TCF12 ENSGALG00000004304 170.12 1369.33 transcription factor 12 [Source:NCBI gene;Acc:396334]
93. RAN ENSGALG00000002569 168.90 1359.51 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
94. YWHAZ ENSGALG00000031387 167.68 1349.69 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
95. PRDX1 ENSGALG00000010243 164.00 1320.07 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
96. BTF3L4 ENSGALG00000010570 162.78 1310.25 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
97. HNRNPA3 ENSGALG00000009250 159.11 1280.71 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
98. HMGN2 HMGN2 157.89 1270.89
99. FTH FTH 156.66 1260.99
100. H2AFZ ENSGALG00000014023 156.66 1260.99 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA