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Experiment Chicken_E3_anterior_slice_3, section s44.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5872.38 47266.93
2. MT-ATP6 MT-ATP6 4762.58 38334.12
3. MT-ND5 MT-ND5 2949.12 23737.54
4. EEF1A EEF1A 2090.26 16824.55
5. gga-mir-3527 gga-mir-3527 2015.23 16220.63
6. MT-CYB MT-CYB 1994.54 16054.10
7. MT-ND4 MT-ND4 1904.00 15325.34
8. MT-CO1 MT-CO1 1836.74 14783.96
9. MT-ND3 MT-ND3 1671.17 13451.29
10. gga-mir-3533 ENSGALG00000027736 1396.95 11244.08 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. GAPDH ENSGALG00000014442 1184.82 9536.64 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ND1 MT-ND1 1073.58 8641.27
13. PPIA ENSGALG00000028600 843.35 6788.14 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. RPS23 ENSGALG00000015617 667.43 5372.16 ribosomal protein S23
15. RPS6 ENSGALG00000015082 651.91 5247.24 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
16. RPL5 ENSGALG00000005922 638.98 5143.17 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. NME2 ENSGALG00000002932 620.87 4997.40 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
18. RPL8 ENSGALG00000016232 595.00 4789.17 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. TMSB4X ENSGALG00000026383 540.67 4351.87 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
20. RPL26 RPL26 535.50 4310.25
21. RPS7 ENSGALG00000016392 522.56 4206.10 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
22. MDK ENSGALG00000008367 509.63 4102.02 midkine [Source:NCBI gene;Acc:423196]
23. STMN1 ENSGALG00000001475 507.04 4081.18 stathmin 1 [Source:NCBI gene;Acc:396057]
24. EIF4G2 ENSGALG00000005587 476.00 3831.34 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
25. RPL27A ENSGALG00000005948 455.30 3664.72 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. RPL7A ENSGALG00000003197 447.54 3602.26 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
27. RPS10 ENSGALG00000002813 437.19 3518.95 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
28. RPL23 ENSGALG00000001634 434.61 3498.19 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
29. ENSGALG00000002696 ENSGALG00000002696 411.33 3310.80
30. ENO1 ENSGALG00000002377 395.80 3185.80 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
31. ATP6V0C ENSGALG00000009229 388.04 3123.34 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
32. LUM ENSGALG00000011271 380.28 3060.88 lumican [Source:NCBI gene;Acc:417891]
33. RPL7 ENSGALG00000035252 375.11 3019.27 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
34. RPS12 ENSGALG00000013990 375.11 3019.27 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
35. RPS4 RPS4 375.11 3019.27
36. RPL18A 349.24 2811.04 ribosomal protein L18a
37. RPS3 ENSGALG00000017330 349.24 2811.04 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
38. MT-ND2 MT-ND2 344.06 2769.35
39. RPL31 ENSGALG00000016775 344.06 2769.35 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
40. ENSGALG00000018384 ENSGALG00000018384 341.48 2748.58
41. RPL15 ENSGALG00000011290 328.54 2644.43 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
42. RPS20 ENSGALG00000014432 325.96 2623.66 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
43. ENSGALG00000018386 ENSGALG00000018386 320.78 2581.97
44. RPS27A ENSGALG00000036790 320.78 2581.97 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
45. EEF1B2 ENSGALG00000008590 318.19 2561.12 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
46. ENSGALG00000028992 ENSGALG00000028992 302.67 2436.20
47. CRHOA CRHOA 300.09 2415.43
48. CIRBP ENSGALG00000030918 292.33 2352.97 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
49. RPS15 ENSGALG00000015195 289.74 2332.12 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
50. RPL37 ENSGALG00000014833 279.39 2248.82 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
51. RPS16 ENSGALG00000026490 276.80 2227.97 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
52. RPS15A ENSGALG00000006771 274.22 2207.20 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
53. RAN ENSGALG00000002569 271.63 2186.36 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
54. RPS11 ENSGALG00000017299 269.04 2165.51 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
55. TXN ENSGALG00000015704 266.46 2144.74 thioredoxin [Source:NCBI gene;Acc:396437]
56. RPL10A ENSGALG00000002644 261.28 2103.05 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
57. RPS8 ENSGALG00000010124 256.11 2061.44 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
58. SLC25A6_1 ENSGALG00000016691 253.52 2040.59 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
59. RPL38 ENSGALG00000001465 250.93 2019.74 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
60. RPL27 ENSGALG00000002837 248.35 1998.98 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
61. H3-IX H3-IX 243.17 1957.28
62. NDUFB9 ENSGALG00000042242 238.00 1915.67 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
63. RPS24 ENSGALG00000004871 238.00 1915.67 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
64. RPS29 ENSGALG00000012229 238.00 1915.67 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
65. RPL14 ENSGALG00000043379 235.41 1894.82 ribosomal protein L14
66. RPSA 235.41 1894.82 ribosomal protein SA
67. ERH ENSGALG00000017384 230.24 1853.21 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
68. RPS3A ENSGALG00000010077 227.65 1832.36 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
69. RPL21 ENSGALG00000027035 225.06 1811.51 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
70. MEIS2 ENSGALG00000039118 222.48 1790.75 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
71. RPL36 ENSGALG00000000474 222.48 1790.75 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
72. RPS14 ENSGALG00000004588 222.48 1790.75 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
73. TCF12 ENSGALG00000004304 219.89 1769.90 transcription factor 12 [Source:NCBI gene;Acc:396334]
74. BTF3L4 ENSGALG00000010570 217.30 1749.05 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
75. COX7C ENSGALG00000027963 217.30 1749.05 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
76. RPL35A ENSGALG00000007611, ENSGALG00000041230 217.30 1749.05 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
77. MT-ND6 MT-ND6 214.72 1728.29
78. RPL32 ENSGALG00000027142 214.72 1728.29 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
79. FKBP4 ENSGALG00000014331 212.13 1707.44 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
80. ALDH1A2 ENSGALG00000004270 209.54 1686.59 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
81. RPLP1 ENSGALG00000030878 206.96 1665.83 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
82. RPL29 ENSGALG00000026978 204.37 1644.98 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
83. RPL3 ENSGALG00000012172 204.37 1644.98 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
84. CALM CALM 201.78 1624.13
85. RPL23A ENSGALG00000003966 199.20 1603.37 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
86. H2AFZ ENSGALG00000014023 196.61 1582.52 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
87. RPL4 ENSGALG00000007711 196.61 1582.52 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
88. SNRPG ENSGALG00000028409 196.61 1582.52 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
89. C5ORF13 C5ORF13 194.02 1561.67
90. GAL10 GAL10 188.85 1520.06
91. RPL19 ENSGALG00000001658 188.85 1520.06 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
92. ANP32B ENSGALG00000037483 183.67 1478.36 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
93. ATP5G3 181.09 1457.60 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
94. TCEB3 ENSGALG00000034625 181.09 1457.60 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
95. KPNA2 ENSGALG00000003584 178.50 1436.75 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
96. RPS21 ENSGALG00000005338 178.50 1436.75 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
97. EIF3F ENSGALG00000005326 173.33 1395.14 eukaryotic translation initiation factor 3 subunit F
98. HMGN5 ENSGALG00000007131 170.74 1374.29 high mobility group nucleosome binding domain 5, transcript variant X1
99. RPL12 ENSGALG00000008806 168.15 1353.44 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
100. TPT1 ENSGALG00000028872 168.15 1353.44 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA