Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s43.

Sample reads: 124,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5576.33 44884.93
2. MT-ND5 MT-ND5 4829.60 38874.36
3. MT-ATP6 MT-ATP6 4819.63 38794.11
4. MT-CYB MT-CYB 2153.70 17335.54
5. gga-mir-3527 gga-mir-3527 2050.59 16505.58
6. MT-CO1 MT-CO1 1975.75 15903.18
7. gga-mir-3533 ENSGALG00000027736 1942.49 15635.47 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. MT-ND4 MT-ND4 1895.92 15260.62
9. EEF1A EEF1A 1722.96 13868.43
10. MT-ND3 MT-ND3 1639.80 13199.06
11. MT-ND1 MT-ND1 1405.31 11311.60
12. GAPDH ENSGALG00000014442 1172.48 9437.51 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. MDK ENSGALG00000008367 981.22 7898.02 midkine [Source:NCBI gene;Acc:423196]
14. PPIA ENSGALG00000028600 904.72 7282.26 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
15. NME2 ENSGALG00000002932 848.17 6827.08 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. RPL5 ENSGALG00000005922 691.84 5568.75 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. RPS23 ENSGALG00000015617 600.37 4832.49 ribosomal protein S23
18. RPS6 ENSGALG00000015082 503.92 4056.15 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. ATP6V0C ENSGALG00000009229 482.30 3882.12 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
20. TMSB4X ENSGALG00000026383 452.36 3641.13 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
21. RPL15 ENSGALG00000011290 445.71 3587.60 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. EIF4G2 ENSGALG00000005587 442.38 3560.80 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
23. RPS3 ENSGALG00000017330 419.10 3373.41 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
24. RPL26 RPL26 417.43 3359.97
25. RPS7 ENSGALG00000016392 417.43 3359.97 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
26. RPL8 ENSGALG00000016232 407.46 3279.72 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
27. STMN1 ENSGALG00000001475 400.80 3226.11 stathmin 1 [Source:NCBI gene;Acc:396057]
28. ENO1 ENSGALG00000002377 352.57 2837.90 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
29. LUM ENSGALG00000011271 350.91 2824.54 lumican [Source:NCBI gene;Acc:417891]
30. MT-ND2 MT-ND2 349.25 2811.18
31. RPL7A ENSGALG00000003197 340.93 2744.21 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
32. RPL18A 335.94 2704.04 ribosomal protein L18a
33. RPS10 ENSGALG00000002813 329.29 2650.52 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
34. RPL7 ENSGALG00000035252 324.30 2610.35 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
35. ENSGALG00000002696 ENSGALG00000002696 322.64 2596.99
36. RPL23 ENSGALG00000001634 311.00 2503.30 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
37. CIRBP ENSGALG00000030918 307.67 2476.49 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
38. EEF1B2 ENSGALG00000008590 297.69 2396.16 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
39. MEIS2 ENSGALG00000039118 296.03 2382.80 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
40. RPL31 ENSGALG00000016775 292.70 2356.00 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
41. ENSGALG00000028992 ENSGALG00000028992 287.71 2315.83
42. RPL27A ENSGALG00000005948 276.07 2222.14 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
43. SLC25A6_1 ENSGALG00000016691 276.07 2222.14 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
44. RPS27A ENSGALG00000036790 269.42 2168.61 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
45. ANP32B ENSGALG00000037483 266.09 2141.81 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
46. CRHOA CRHOA 266.09 2141.81
47. H3-IX H3-IX 266.09 2141.81
48. RPS4 RPS4 259.44 2088.28
49. EIF1 ENSGALG00000028517 254.45 2048.12 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
50. RPS8 ENSGALG00000010124 244.47 1967.79 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
51. RPS12 ENSGALG00000013990 241.15 1941.06 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
52. ENSGALG00000018386 ENSGALG00000018386 239.48 1927.62
53. RPL21 ENSGALG00000027035 239.48 1927.62 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
54. RPS15 ENSGALG00000015195 239.48 1927.62 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
55. ENSGALG00000018384 ENSGALG00000018384 237.82 1914.26
56. RPL37 ENSGALG00000014833 237.82 1914.26 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
57. RPS16 ENSGALG00000026490 237.82 1914.26 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
58. SNRPG ENSGALG00000028409 231.17 1860.73 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
59. TPT1 ENSGALG00000028872 227.84 1833.93 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
60. ATP5G3 224.52 1807.20 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
61. TXN ENSGALG00000015704 222.85 1793.76 thioredoxin [Source:NCBI gene;Acc:396437]
62. RPL32 ENSGALG00000027142 217.86 1753.60 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
63. ERH ENSGALG00000017384 216.20 1740.23 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
64. EIF3F ENSGALG00000005326 214.54 1726.87 eukaryotic translation initiation factor 3 subunit F
65. RPL35A ENSGALG00000007611, ENSGALG00000041230 211.21 1700.07 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
66. RPS20 ENSGALG00000014432 209.55 1686.71 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
67. RPS3A ENSGALG00000010077 207.89 1673.35 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
68. NONO ENSGALG00000005507 206.22 1659.90 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
69. RPS29 ENSGALG00000012229 206.22 1659.90 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
70. RPSA 206.22 1659.90 ribosomal protein SA
71. RPL10A ENSGALG00000002644 202.90 1633.18 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
72. RPL36 ENSGALG00000000474 202.90 1633.18 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
73. TCF12 ENSGALG00000004304 202.90 1633.18 transcription factor 12 [Source:NCBI gene;Acc:396334]
74. RPS24 ENSGALG00000004871 201.23 1619.74 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
75. RPL12 ENSGALG00000008806 197.91 1593.01 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
76. RPL6 ENSGALG00000004818 197.91 1593.01 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
77. RPLP1 ENSGALG00000030878 197.91 1593.01 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
78. RAN ENSGALG00000002569 196.24 1579.57 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
79. RPL29 ENSGALG00000026978 196.24 1579.57 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
80. PNRC1 ENSGALG00000015780 191.26 1539.49 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
81. NDUFB9 ENSGALG00000042242 187.93 1512.68 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
82. PDIA6 ENSGALG00000016447 187.93 1512.68 protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168]
83. RPL27 ENSGALG00000002837 186.27 1499.32 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
84. RPS11 ENSGALG00000017299 186.27 1499.32 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
85. H2AFZ ENSGALG00000014023 177.95 1432.35 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
86. RPL14 ENSGALG00000043379 176.29 1418.99 ribosomal protein L14
87. RPL4 ENSGALG00000007711 176.29 1418.99 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
88. HNRNPA3 ENSGALG00000009250 174.62 1405.55 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
89. RPL3 ENSGALG00000012172 174.62 1405.55 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
90. CALM CALM 171.30 1378.83
91. ENSGALG00000028649 ENSGALG00000028649 171.30 1378.83
92. COX7C ENSGALG00000027963 169.63 1365.38 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
93. RPS14 ENSGALG00000004588 169.63 1365.38 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
94. RPS15A ENSGALG00000006771 169.63 1365.38 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
95. CNN3 ENSGALG00000005597 167.97 1352.02 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
96. FKBP4 ENSGALG00000014331 167.97 1352.02 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
97. RPL38 ENSGALG00000001465 166.31 1338.66 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
98. BTF3L4 ENSGALG00000010570 162.98 1311.86 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
99. C5ORF13 C5ORF13 162.98 1311.86
100. LPHN2 LPHN2 161.32 1298.50
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA