Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s42.

Sample reads: 124,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 7360.31 59242.27
2. MT-ATP6 MT-ATP6 4265.28 34330.74
3. MT-ND5 MT-ND5 3625.16 29178.49
4. MT-CYB MT-CYB 2804.66 22574.38
5. MT-ND4 MT-ND4 2144.74 17262.76
6. gga-mir-3527 gga-mir-3527 2045.75 16466.00
7. MT-CO1 MT-CO1 1992.96 16041.10
8. EEF1A EEF1A 1944.56 15651.54
9. gga-mir-3533 ENSGALG00000027736 1867.57 15031.85 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. MT-ND3 MT-ND3 1856.57 14943.31
11. GAPDH ENSGALG00000014442 1187.86 9560.95 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ND1 MT-ND1 1135.06 9135.97
13. PPIA ENSGALG00000028600 906.29 7294.62 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. MDK ENSGALG00000008367 853.50 6869.72 midkine [Source:NCBI gene;Acc:423196]
15. RPL5 ENSGALG00000005922 730.31 5878.18 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPS23 ENSGALG00000015617 728.11 5860.47 ribosomal protein S23
17. RPS6 ENSGALG00000015082 613.73 4939.84 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
18. NME2 ENSGALG00000002932 589.53 4745.06 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
19. RPL8 ENSGALG00000016232 532.34 4284.74 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. ENSGALG00000002696 ENSGALG00000002696 499.34 4019.13
21. RPL15 ENSGALG00000011290 488.34 3930.59 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. TMSB4X ENSGALG00000026383 479.54 3859.76 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
23. RPL26 RPL26 475.14 3824.35
24. RPS7 ENSGALG00000016392 453.14 3647.27 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
25. RPL27A ENSGALG00000005948 446.55 3594.23 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. STMN1 ENSGALG00000001475 426.75 3434.86 stathmin 1 [Source:NCBI gene;Acc:396057]
27. ATP6V0C ENSGALG00000009229 411.35 3310.91 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
28. RPL7 ENSGALG00000035252 398.15 3204.66 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
29. ENO1 ENSGALG00000002377 387.15 3116.13 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
30. RPL18A 384.95 3098.42 ribosomal protein L18a
31. RPL31 ENSGALG00000016775 378.35 3045.29 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
32. RPL7A ENSGALG00000003197 376.15 3027.59 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
33. CIRBP ENSGALG00000030918 371.75 2992.17 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
34. EIF4G2 ENSGALG00000005587 354.16 2850.59 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
35. LUM ENSGALG00000011271 349.76 2815.18 lumican [Source:NCBI gene;Acc:417891]
36. ENSGALG00000028992 ENSGALG00000028992 345.36 2779.76
37. RPS10 ENSGALG00000002813 334.36 2691.22 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
38. RPS8 ENSGALG00000010124 325.56 2620.39 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
39. RPS12 ENSGALG00000013990 323.36 2602.69 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
40. RPS3 ENSGALG00000017330 316.76 2549.56 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
41. CRHOA CRHOA 310.16 2496.44
42. EEF1B2 ENSGALG00000008590 310.16 2496.44 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
43. RPL21 ENSGALG00000027035 310.16 2496.44 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
44. RPL32 ENSGALG00000027142 305.76 2461.03 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
45. MT-ND2 MT-ND2 301.36 2425.61
46. MEIS2 ENSGALG00000039118 290.36 2337.07 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
47. NDUFB9 ENSGALG00000042242 288.17 2319.45 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
48. RPL23 ENSGALG00000001634 283.77 2284.03 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
49. RPLP1 ENSGALG00000030878 281.57 2266.32 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
50. RPL36 ENSGALG00000000474 279.37 2248.62 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
51. ENSGALG00000018384 ENSGALG00000018384 274.97 2213.20
52. RPS16 ENSGALG00000026490 270.57 2177.79 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
53. RPS20 ENSGALG00000014432 270.57 2177.79 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
54. RPL14 ENSGALG00000043379 266.17 2142.37 ribosomal protein L14
55. RPS4 RPS4 266.17 2142.37
56. ENSGALG00000018386 ENSGALG00000018386 263.97 2124.66
57. RPS27A ENSGALG00000036790 261.77 2106.96 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
58. RPL10A ENSGALG00000002644 259.57 2089.25 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
59. RPL37 ENSGALG00000014833 259.57 2089.25 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
60. RPS15A ENSGALG00000006771 259.57 2089.25 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
61. RPS29 ENSGALG00000012229 257.37 2071.54 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
62. SLC25A6_1 ENSGALG00000016691 255.17 2053.83 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
63. SNRPG ENSGALG00000028409 255.17 2053.83 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
64. H3-IX H3-IX 248.57 2000.71
65. RPS15 ENSGALG00000015195 241.97 1947.59 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
66. COX7C ENSGALG00000027963 237.57 1912.17 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
67. RPS11 ENSGALG00000017299 237.57 1912.17 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
68. ATP5G3 233.17 1876.76 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
69. RPL38 ENSGALG00000001465 230.97 1859.05 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
70. RPL35A ENSGALG00000007611, ENSGALG00000041230 226.57 1823.64 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
71. RPS14 ENSGALG00000004588 226.57 1823.64 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
72. ERH ENSGALG00000017384 224.37 1805.93 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
73. RPSA 219.97 1770.51 ribosomal protein SA
74. RPS24 ENSGALG00000004871 217.77 1752.81 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
75. RPS3A ENSGALG00000010077 217.77 1752.81 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
76. FKBP4 ENSGALG00000014331 215.57 1735.10 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
77. ANP32B ENSGALG00000037483 208.97 1681.98 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
78. RPL12 ENSGALG00000008806 206.77 1664.27 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
79. CNN3 ENSGALG00000005597 197.98 1593.52 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
80. TXN ENSGALG00000015704 197.98 1593.52 thioredoxin [Source:NCBI gene;Acc:396437]
81. RAN ENSGALG00000002569 195.78 1575.81 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
82. HNRNPDL ENSGALG00000023199 191.38 1540.40 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
83. RPL13 ENSGALG00000006179 191.38 1540.40 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
84. RPL27 ENSGALG00000002837 191.38 1540.40 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
85. RPL3 ENSGALG00000012172 191.38 1540.40 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
86. RPL4 ENSGALG00000007711 191.38 1540.40 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
87. BTF3L4 ENSGALG00000010570 189.18 1522.69 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
88. RPS21 ENSGALG00000005338 189.18 1522.69 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
89. EIF3F ENSGALG00000005326 186.98 1504.98 eukaryotic translation initiation factor 3 subunit F
90. MT-ND6 MT-ND6 186.98 1504.98
91. TCF12 ENSGALG00000004304 186.98 1504.98 transcription factor 12 [Source:NCBI gene;Acc:396334]
92. MIF ENSGALG00000006326 184.78 1487.27 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
93. EIF1 ENSGALG00000028517 182.58 1469.57 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
94. RPL6 ENSGALG00000004818 182.58 1469.57 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
95. RPL29 ENSGALG00000026978 178.18 1434.15 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
96. TPT1 ENSGALG00000028872 175.98 1416.44 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
97. RPL23A ENSGALG00000003966 173.78 1398.73 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
98. HMGN5 ENSGALG00000007131 171.58 1381.03 high mobility group nucleosome binding domain 5, transcript variant X1
99. TCEB3 ENSGALG00000034625 171.58 1381.03 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
100. EEF1D 167.18 1345.61 eukaryotic translation elongation factor 1 delta, transcript variant X13
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA