Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s41.

Sample reads: 124,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5403.73 43501.40
2. MT-ND5 MT-ND5 5324.42 42862.94
3. MT-ATP6 MT-ATP6 4978.74 40080.13
4. MT-CYB MT-CYB 2757.98 22202.44
5. MT-ND4 MT-ND4 2074.10 16697.03
6. gga-mir-3533 ENSGALG00000027736 1909.49 15371.88 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. gga-mir-3527 gga-mir-3527 1813.71 14600.83
8. EEF1A EEF1A 1782.29 14347.89
9. MT-CO1 MT-CO1 1689.51 13600.99
10. MT-ND3 MT-ND3 1438.10 11577.07
11. GAPDH ENSGALG00000014442 1218.12 9806.18 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ND1 MT-ND1 1143.30 9203.86
13. PPIA ENSGALG00000028600 1098.40 8842.40 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. MDK ENSGALG00000008367 1005.62 8095.50 midkine [Source:NCBI gene;Acc:423196]
15. NME2 ENSGALG00000002932 881.42 7095.66 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. RPS23 ENSGALG00000015617 674.91 5433.20 ribosomal protein S23
17. ATP6V0C ENSGALG00000009229 600.08 4830.80 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
18. TMSB4X ENSGALG00000026383 564.17 4541.71 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
19. RPS6 ENSGALG00000015082 547.71 4409.21 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
20. RPL5 ENSGALG00000005922 489.34 3939.31 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
21. RPL8 ENSGALG00000016232 447.44 3602.01 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
22. STMN1 ENSGALG00000001475 445.95 3590.01 stathmin 1 [Source:NCBI gene;Acc:396057]
23. RPS3 ENSGALG00000017330 432.48 3481.57 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
24. RPL26 RPL26 411.53 3312.92
25. CIRBP ENSGALG00000030918 399.56 3216.56 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
26. RPL15 ENSGALG00000011290 396.56 3192.41 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
27. EIF4G2 ENSGALG00000005587 384.59 3096.05 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
28. RPL7A ENSGALG00000003197 371.12 2987.61 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
29. LUM ENSGALG00000011271 354.66 2855.10 lumican [Source:NCBI gene;Acc:417891]
30. RPL7 ENSGALG00000035252 354.66 2855.10 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
31. RPS7 ENSGALG00000016392 354.66 2855.10 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
32. RPL23 ENSGALG00000001634 353.17 2843.11 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
33. RPL31 ENSGALG00000016775 348.68 2806.96 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
34. RPS27A ENSGALG00000036790 342.69 2758.74 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
35. ENO1 ENSGALG00000002377 336.70 2710.52 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
36. RPS4 RPS4 330.72 2662.38
37. RPS10 ENSGALG00000002813 327.73 2638.31 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
38. ENSGALG00000002696 ENSGALG00000002696 317.25 2553.94
39. RPL18A 309.77 2493.73 ribosomal protein L18a
40. RPL27A ENSGALG00000005948 306.78 2469.66 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
41. TXN ENSGALG00000015704 299.29 2409.36 thioredoxin [Source:NCBI gene;Acc:396437]
42. MT-ND2 MT-ND2 294.80 2373.22
43. ENSGALG00000018384 ENSGALG00000018384 288.82 2325.07
44. EEF1B2 ENSGALG00000008590 287.32 2313.00 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
45. FKBP4 ENSGALG00000014331 275.35 2216.64 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
46. CRHOA CRHOA 266.37 2144.35
47. RPS20 ENSGALG00000014432 263.38 2120.28 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
48. MEIS2 ENSGALG00000039118 260.38 2096.13 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
49. EIF1 ENSGALG00000028517 257.39 2072.06 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
50. RPS16 ENSGALG00000026490 249.91 2011.84 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
51. RPS12 ENSGALG00000013990 248.41 1999.76 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
52. RPL37 ENSGALG00000014833 246.92 1987.77 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
53. ENSGALG00000028992 ENSGALG00000028992 242.43 1951.62
54. SLC25A6_1 ENSGALG00000016691 240.93 1939.55 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
55. C5ORF13 C5ORF13 237.94 1915.48
56. H3-IX H3-IX 230.46 1855.26
57. COL1A2 ENSGALG00000009641 228.96 1843.19 collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]
58. RPS14 ENSGALG00000004588 225.97 1819.12 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
59. RPS15A ENSGALG00000006771 222.97 1794.97 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
60. RPL36 ENSGALG00000000474 221.48 1782.97 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
61. RPLP1 ENSGALG00000030878 219.98 1770.90 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
62. NDUFB9 ENSGALG00000042242 216.99 1746.82 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
63. PNRC1 ENSGALG00000015780 216.99 1746.82 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
64. RPSA 215.49 1734.75 ribosomal protein SA
65. EIF3F ENSGALG00000005326 212.50 1710.68 eukaryotic translation initiation factor 3 subunit F
66. RPL12 ENSGALG00000008806 212.50 1710.68 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
67. RPS24 ENSGALG00000004871 211.00 1698.60 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
68. RPL29 ENSGALG00000026978 209.50 1686.53 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
69. ENSGALG00000018386 ENSGALG00000018386 205.02 1650.46
70. RPL35A ENSGALG00000007611, ENSGALG00000041230 203.52 1638.39 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
71. CALM CALM 199.03 1602.24
72. ANP32B ENSGALG00000037483 196.04 1578.17 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
73. RPL32 ENSGALG00000027142 194.54 1566.10 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
74. ERH ENSGALG00000017384 193.04 1554.02 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
75. ATP5G3 191.55 1542.03 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
76. RAN ENSGALG00000002569 191.55 1542.03 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
77. RPL21 ENSGALG00000027035 191.55 1542.03 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
78. RPS11 ENSGALG00000017299 191.55 1542.03 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
79. TPT1 ENSGALG00000028872 191.55 1542.03 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
80. H2AFZ ENSGALG00000014023 188.55 1517.88 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
81. NONO ENSGALG00000005507 187.06 1505.88 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
82. SNRPG ENSGALG00000028409 187.06 1505.88 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
83. IGF2BP3 ENSGALG00000010961 184.07 1481.81 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
84. RPL10A ENSGALG00000002644 184.07 1481.81 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
85. RPS29 ENSGALG00000012229 184.07 1481.81 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
86. BTF3L4 ENSGALG00000010570 182.57 1469.74 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
87. CNN3 ENSGALG00000005597 178.08 1433.59 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
88. EIF5A2 ENSGALG00000009309 176.58 1421.51 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
89. HNRNPA3 ENSGALG00000009250 175.09 1409.52 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
90. RPL14 ENSGALG00000043379 172.09 1385.37 ribosomal protein L14
91. RPL23A ENSGALG00000003966 170.60 1373.37 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
92. RPS15 ENSGALG00000015195 170.60 1373.37 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
93. RPL38 ENSGALG00000001465 169.10 1361.30 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
94. HNRNPDL ENSGALG00000023199 167.60 1349.22 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
95. CADM1 ENSGALG00000014582 166.11 1337.23 cell adhesion molecule 1 [Source:HGNC Symbol;Acc:HGNC:5951]
96. ENSGALG00000028649 ENSGALG00000028649 164.61 1325.15
97. RPS3A ENSGALG00000010077 164.61 1325.15 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
98. LDHB ENSGALG00000035836 163.11 1313.08 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
99. COX7C ENSGALG00000027963 160.12 1289.01 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
100. RPL3 ENSGALG00000012172 158.63 1277.01 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA