Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s40.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 5766.96 46420.61
2. MT-CO3 MT-CO3 4669.20 37584.30
3. MT-ND5 MT-ND5 3948.33 31781.72
4. MT-CYB MT-CYB 2389.94 19237.60
5. gga-mir-3527 gga-mir-3527 2279.27 18346.77
6. MT-ND4 MT-ND4 1827.60 14711.10
7. EEF1A EEF1A 1737.87 13988.82
8. gga-mir-3533 ENSGALG00000027736 1657.10 13338.67 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. MT-CO1 MT-CO1 1414.82 11388.46
10. MT-ND3 MT-ND3 1396.87 11243.98
11. PPIA ENSGALG00000028600 1337.05 10762.46 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
12. MT-ND1 MT-ND1 1187.49 9558.59
13. GAPDH ENSGALG00000014442 1136.64 9149.28 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. MDK ENSGALG00000008367 894.36 7199.07 midkine [Source:NCBI gene;Acc:423196]
15. RPS23 ENSGALG00000015617 765.74 6163.75 ribosomal protein S23
16. NME2 ENSGALG00000002932 696.94 5609.95 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
17. RPL5 ENSGALG00000005922 678.99 5465.47 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. RPL15 ENSGALG00000011290 610.20 4911.75 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. RPS6 ENSGALG00000015082 562.34 4526.50 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
20. TMSB4X ENSGALG00000026383 529.44 4261.68 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
21. EIF4G2 ENSGALG00000005587 514.48 4141.26 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
22. RPL8 ENSGALG00000016232 487.56 3924.57 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
23. RPL7 ENSGALG00000035252 463.63 3731.95 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
24. ATP6V0C ENSGALG00000009229 460.64 3707.88 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
25. RPS10 ENSGALG00000002813 451.67 3635.68 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
26. ENSGALG00000002696 ENSGALG00000002696 430.73 3467.12
27. RPL7A ENSGALG00000003197 430.73 3467.12 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
28. RPS7 ENSGALG00000016392 427.74 3443.05 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
29. RPL27A ENSGALG00000005948 421.75 3394.84 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. RPL26 RPL26 394.83 3178.15
31. ENSGALG00000018384 ENSGALG00000018384 388.85 3130.01
32. MT-ND2 MT-ND2 379.88 3057.81
33. RPS4 RPS4 379.88 3057.81
34. CIRBP ENSGALG00000030918 367.91 2961.46 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
35. STMN1 ENSGALG00000001475 367.91 2961.46 stathmin 1 [Source:NCBI gene;Acc:396057]
36. RPL18A 349.97 2817.05 ribosomal protein L18a
37. RPS3 ENSGALG00000017330 349.97 2817.05 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
38. EEF1B2 ENSGALG00000008590 343.98 2768.84 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
39. RPL31 ENSGALG00000016775 340.99 2744.77 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
40. ENO1 ENSGALG00000002377 332.02 2672.56 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
41. LUM ENSGALG00000011271 332.02 2672.56 lumican [Source:NCBI gene;Acc:417891]
42. RPS11 ENSGALG00000017299 323.05 2600.36 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
43. RPS15A ENSGALG00000006771 314.07 2528.08 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
44. CRHOA CRHOA 308.09 2479.94
45. RPL23 ENSGALG00000001634 287.15 2311.39 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
46. RPS15 ENSGALG00000015195 287.15 2311.39 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
47. RPS16 ENSGALG00000026490 287.15 2311.39 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
48. ATP5G3 278.18 2239.18 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
49. RPS29 ENSGALG00000012229 278.18 2239.18 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
50. RPL14 ENSGALG00000043379 275.19 2215.12 ribosomal protein L14
51. RPS27A ENSGALG00000036790 275.19 2215.12 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
52. RPL21 ENSGALG00000027035 269.20 2166.90 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
53. ENSGALG00000018386 ENSGALG00000018386 266.21 2142.83
54. ENSGALG00000028992 ENSGALG00000028992 266.21 2142.83
55. RPS21 ENSGALG00000005338 260.23 2094.70 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
56. RPS24 ENSGALG00000004871 260.23 2094.70 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
57. RPL32 ENSGALG00000027142 254.25 2046.56 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
58. RPL10A ENSGALG00000002644 251.26 2022.49 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
59. RPS20 ENSGALG00000014432 251.26 2022.49 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
60. RPS3A ENSGALG00000010077 251.26 2022.49 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
61. EIF1 ENSGALG00000028517 248.27 1998.43 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
62. RPL4 ENSGALG00000007711 248.27 1998.43 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
63. RPLP1 ENSGALG00000030878 248.27 1998.43 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
64. EIF3F ENSGALG00000005326 236.30 1902.08 eukaryotic translation initiation factor 3 subunit F
65. FKBP4 ENSGALG00000014331 233.31 1878.01 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
66. SLC25A6_1 ENSGALG00000016691 233.31 1878.01 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
67. RPS8 ENSGALG00000010124 230.32 1853.94 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
68. TPT1 ENSGALG00000028872 230.32 1853.94 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
69. RPL27 ENSGALG00000002837 227.33 1829.87 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
70. RPSA 227.33 1829.87 ribosomal protein SA
71. MEIS2 ENSGALG00000039118 224.34 1805.80 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
72. RPL37 ENSGALG00000014833 224.34 1805.80 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
73. RPL36 ENSGALG00000000474 218.35 1757.59 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
74. SNRPG ENSGALG00000028409 218.35 1757.59 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
75. RPS14 ENSGALG00000004588 215.36 1733.52 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
76. LDHB ENSGALG00000035836 209.38 1685.39 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
77. RAN ENSGALG00000002569 209.38 1685.39 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
78. RPS12 ENSGALG00000013990 209.38 1685.39 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
79. ERH ENSGALG00000017384 206.39 1661.32 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
80. NDUFB9 ENSGALG00000042242 206.39 1661.32 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
81. TXN ENSGALG00000015704 203.40 1637.25 thioredoxin [Source:NCBI gene;Acc:396437]
82. RPL29 ENSGALG00000026978 197.42 1589.11 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
83. RPL38 ENSGALG00000001465 197.42 1589.11 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
84. RPL35A ENSGALG00000007611, ENSGALG00000041230 194.43 1565.05 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
85. PNRC1 ENSGALG00000015780 191.43 1540.90 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
86. RPL13 ENSGALG00000006179 191.43 1540.90 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
87. RPL23A ENSGALG00000003966 191.43 1540.90 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
88. ANP32B ENSGALG00000037483 188.44 1516.83 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
89. COX7C ENSGALG00000027963 188.44 1516.83 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
90. RPL12 ENSGALG00000008806 188.44 1516.83 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
91. RPL3 ENSGALG00000012172 188.44 1516.83 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
92. HMGN5 ENSGALG00000007131 182.46 1468.69 high mobility group nucleosome binding domain 5, transcript variant X1
93. MT-ND6 MT-ND6 179.47 1444.63
94. EEF1D 176.48 1420.56 eukaryotic translation elongation factor 1 delta, transcript variant X13
95. EIF5A2 ENSGALG00000009309 176.48 1420.56 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
96. NONO ENSGALG00000005507 176.48 1420.56 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
97. PTBP1 ENSGALG00000001962 176.48 1420.56 polypyrimidine tract binding protein 1 [Source:NCBI gene;Acc:420098]
98. RPS2 ENSGALG00000005490 176.48 1420.56 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
99. H3-IX H3-IX 173.49 1396.49
100. HNRNPA3 ENSGALG00000009250 173.49 1396.49 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA