Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s39.

Sample reads: 124,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5747.14 46263.17
2. MT-ATP6 MT-ATP6 5562.79 44779.20
3. MT-ND5 MT-ND5 4782.61 38498.93
4. MT-CYB MT-CYB 2669.18 21486.29
5. gga-mir-3527 gga-mir-3527 2132.13 17163.16
6. gga-mir-3533 ENSGALG00000027736 2033.28 16367.44 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. MT-ND4 MT-ND4 1961.14 15786.73
8. EEF1A EEF1A 1832.89 14754.35
9. MT-CO1 MT-CO1 1648.53 13270.29
10. MT-ND1 MT-ND1 1493.56 12022.82
11. MT-ND3 MT-ND3 1434.78 11549.65
12. GAPDH ENSGALG00000014442 1213.02 9764.54 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. PPIA ENSGALG00000028600 1050.04 8452.58 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 900.41 7248.10 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. MDK ENSGALG00000008367 844.30 6796.42 midkine [Source:NCBI gene;Acc:423196]
16. RPS23 ENSGALG00000015617 718.73 5785.61 ribosomal protein S23
17. TMSB4X ENSGALG00000026383 611.85 4925.25 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
18. RPS6 ENSGALG00000015082 606.51 4882.27 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. RPL5 ENSGALG00000005922 529.03 4258.57 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
20. RPL15 ENSGALG00000011290 504.98 4064.97 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. RPL8 ENSGALG00000016232 494.29 3978.92 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
22. STMN1 ENSGALG00000001475 478.26 3849.88 stathmin 1 [Source:NCBI gene;Acc:396057]
23. RPL7A ENSGALG00000003197 467.57 3763.83 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
24. RPL18A 438.18 3527.25 ribosomal protein L18a
25. ENSGALG00000002696 ENSGALG00000002696 422.15 3398.21
26. ATP6V0C ENSGALG00000009229 408.79 3290.67 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
27. ENO1 ENSGALG00000002377 406.12 3269.17 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
28. RPL23 ENSGALG00000001634 398.11 3204.70 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
29. RPL27A ENSGALG00000005948 395.43 3183.12 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. RPL7 ENSGALG00000035252 395.43 3183.12 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
31. RPS7 ENSGALG00000016392 392.76 3161.63 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
32. RPS10 ENSGALG00000002813 376.73 3032.59 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
33. RPS11 ENSGALG00000017299 368.71 2968.03 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
34. EIF4G2 ENSGALG00000005587 360.70 2903.55 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
35. RPL26 RPL26 352.68 2838.99
36. MT-ND2 MT-ND2 336.65 2709.96
37. ENSGALG00000028992 ENSGALG00000028992 328.64 2645.48
38. RPL31 ENSGALG00000016775 320.62 2580.92 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
39. RPS15A ENSGALG00000006771 315.28 2537.93 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
40. RPS4 RPS4 315.28 2537.93
41. ENSGALG00000018384 ENSGALG00000018384 312.61 2516.44
42. CIRBP ENSGALG00000030918 309.93 2494.87 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
43. ENSGALG00000018386 ENSGALG00000018386 296.58 2387.40
44. ANP32B ENSGALG00000037483 288.56 2322.84 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
45. RPL36 ENSGALG00000000474 288.56 2322.84 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
46. RPS20 ENSGALG00000014432 288.56 2322.84 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
47. RPS29 ENSGALG00000012229 288.56 2322.84 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
48. LUM ENSGALG00000011271 285.89 2301.35 lumican [Source:NCBI gene;Acc:417891]
49. RPL38 ENSGALG00000001465 285.89 2301.35 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
50. RPS3 ENSGALG00000017330 283.22 2279.86 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
51. RPSA 280.54 2258.28 ribosomal protein SA
52. RPL37 ENSGALG00000014833 275.20 2215.30 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
53. RPS12 ENSGALG00000013990 272.53 2193.80 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
54. FKBP4 ENSGALG00000014331 269.86 2172.31 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
55. RPL32 ENSGALG00000027142 269.86 2172.31 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
56. SLC25A6_1 ENSGALG00000016691 264.51 2129.25 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
57. H3-IX H3-IX 261.84 2107.75
58. EEF1B2 ENSGALG00000008590 256.50 2064.77 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
59. NDUFB9 ENSGALG00000042242 253.83 2043.27 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
60. RPS16 ENSGALG00000026490 248.48 2000.21 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
61. RPLP1 ENSGALG00000030878 245.81 1978.71 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
62. RPL10A ENSGALG00000002644 243.14 1957.22 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
63. RPS14 ENSGALG00000004588 237.79 1914.16 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
64. SNRPG ENSGALG00000028409 237.79 1914.16 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
65. ATP5G3 235.12 1892.66 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
66. CRHOA CRHOA 235.12 1892.66
67. KPNA2 ENSGALG00000003584 235.12 1892.66 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
68. RPS8 ENSGALG00000010124 232.45 1871.17 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
69. RPL12 ENSGALG00000008806 227.11 1828.18 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
70. TPT1 ENSGALG00000028872 227.11 1828.18 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
71. TXN ENSGALG00000015704 227.11 1828.18 thioredoxin [Source:NCBI gene;Acc:396437]
72. RAN ENSGALG00000002569 224.44 1806.69 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
73. RPL27 ENSGALG00000002837 221.76 1785.12 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
74. RPL29 ENSGALG00000026978 221.76 1785.12 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
75. RPS24 ENSGALG00000004871 221.76 1785.12 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
76. RPL35A ENSGALG00000007611, ENSGALG00000041230 219.09 1763.62 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
77. RPS3A ENSGALG00000010077 219.09 1763.62 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
78. EIF1 ENSGALG00000028517 216.42 1742.13 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
79. RPL14 ENSGALG00000043379 216.42 1742.13 ribosomal protein L14
80. RPL23A ENSGALG00000003966 213.75 1720.64 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
81. RPS15 ENSGALG00000015195 213.75 1720.64 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
82. MT-ND6 MT-ND6 205.73 1656.08
83. RPL21 ENSGALG00000027035 205.73 1656.08 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
84. COX7C ENSGALG00000027963 195.04 1570.03 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
85. MEIS2 ENSGALG00000039118 195.04 1570.03 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
86. RPS21 ENSGALG00000005338 192.37 1548.53 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
87. RPS27A ENSGALG00000036790 192.37 1548.53 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
88. RPL3 ENSGALG00000012172 189.70 1527.04 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
89. EEF1D 187.03 1505.55 eukaryotic translation elongation factor 1 delta, transcript variant X13
90. RPLP0 ENSGALG00000023294 187.03 1505.55 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
91. HNRNPDL ENSGALG00000023199 184.36 1484.06 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
92. MIF ENSGALG00000006326 184.36 1484.06 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
93. EIF3F ENSGALG00000005326 181.69 1462.56 eukaryotic translation initiation factor 3 subunit F
94. HMGN5 ENSGALG00000007131 181.69 1462.56 high mobility group nucleosome binding domain 5, transcript variant X1
95. CDK1 ENSGALG00000003085 173.67 1398.00 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
96. ERH ENSGALG00000017384 173.67 1398.00 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
97. H2AFZ ENSGALG00000014023 173.67 1398.00 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
98. CAPZA2 ENSGALG00000043437 171.00 1376.51 capping actin protein of muscle Z-line alpha subunit 2 [Source:NCBI gene;Acc:417771]
99. RPL4 ENSGALG00000007711 171.00 1376.51 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
100. CNN3 ENSGALG00000005597 168.33 1355.02 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA