Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s37.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 6894.60 55497.76
2. MT-CO3 MT-CO3 6212.32 50005.78
3. MT-ND5 MT-ND5 4554.97 36665.02
4. MT-CYB MT-CYB 2730.49 21978.95
5. gga-mir-3527 gga-mir-3527 2628.29 21156.30
6. MT-ND3 MT-ND3 2385.21 19199.64
7. MT-ND4 MT-ND4 2347.92 18899.47
8. MT-ND1 MT-ND1 2254.00 18143.47
9. MT-CO1 MT-CO1 1994.35 16053.43
10. EEF1A EEF1A 1759.56 14163.50
11. gga-mir-3533 ENSGALG00000027736 1522.01 12251.35 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. GAPDH ENSGALG00000014442 1260.97 10150.12 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. PPIA ENSGALG00000028600 1202.96 9683.17 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. RPS23 ENSGALG00000015617 987.51 7948.92 ribosomal protein S23
15. NME2 ENSGALG00000002932 864.59 6959.48 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. TMSB4X ENSGALG00000026383 698.85 5625.36 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
17. RPL5 ENSGALG00000005922 635.32 5113.98 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. RPS3 ENSGALG00000017330 604.93 4869.36 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
19. MDK ENSGALG00000008367 592.50 4769.30 midkine [Source:NCBI gene;Acc:423196]
20. RPL15 ENSGALG00000011290 534.50 4302.43 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. RPS6 ENSGALG00000015082 512.40 4124.54 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
22. RPL7 ENSGALG00000035252 486.16 3913.32 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
23. RPL31 ENSGALG00000016775 484.78 3902.21 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
24. RPS4 RPS4 470.97 3791.05
25. RPS7 ENSGALG00000016392 466.82 3757.65 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
26. RPL18A 462.68 3724.32 ribosomal protein L18a
27. RPL8 ENSGALG00000016232 462.68 3724.32 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
28. RPL7A ENSGALG00000003197 437.82 3524.21 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
29. MT-ND2 MT-ND2 436.44 3513.10
30. RPL23 ENSGALG00000001634 436.44 3513.10 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
31. STMN1 ENSGALG00000001475 407.43 3279.59 stathmin 1 [Source:NCBI gene;Acc:396057]
32. RPL27A ENSGALG00000005948 403.29 3246.26 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
33. RPS10 ENSGALG00000002813 399.15 3212.94 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
34. ENSGALG00000002696 ENSGALG00000002696 393.62 3168.43
35. RPL26 RPL26 392.24 3157.32
36. ATP6V0C ENSGALG00000009229 381.19 3068.37 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
37. ENO1 ENSGALG00000002377 353.57 2846.05 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
38. EIF4G2 ENSGALG00000005587 352.19 2834.94 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
39. EEF1B2 ENSGALG00000008590 339.76 2734.88 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
40. RPSA 317.66 2556.99 ribosomal protein SA
41. CIRBP ENSGALG00000030918 316.28 2545.88 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
42. RPL36 ENSGALG00000000474 316.28 2545.88 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
43. RPS29 ENSGALG00000012229 306.61 2468.04 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
44. ENSGALG00000028992 ENSGALG00000028992 305.23 2456.93
45. RPS24 ENSGALG00000004871 305.23 2456.93 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
46. RPS11 ENSGALG00000017299 303.85 2445.83 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
47. RPL27 ENSGALG00000002837 302.47 2434.72 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
48. NDUFB9 ENSGALG00000042242 301.09 2423.61 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
49. RPL32 ENSGALG00000027142 298.32 2401.31 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
50. RPS16 ENSGALG00000026490 294.18 2367.99 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
51. RPS27A ENSGALG00000036790 291.42 2345.77 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
52. RPS12 ENSGALG00000013990 283.13 2279.04 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
53. RPS20 ENSGALG00000014432 281.75 2267.93 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
54. SLC25A6_1 ENSGALG00000016691 272.08 2190.10 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
55. RPL10A ENSGALG00000002644 270.70 2178.99 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
56. RPS15 ENSGALG00000015195 266.56 2145.66 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
57. RPS15A ENSGALG00000006771 262.41 2112.26 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
58. RAN ENSGALG00000002569 261.03 2101.15 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
59. RPS14 ENSGALG00000004588 259.65 2090.04 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
60. RPL37 ENSGALG00000014833 256.89 2067.82 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
61. RPL38 ENSGALG00000001465 252.75 2034.50 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
62. RPL23A ENSGALG00000003966 249.98 2012.20 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
63. RPL29 ENSGALG00000026978 249.98 2012.20 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
64. TXN ENSGALG00000015704 243.08 1956.66 thioredoxin [Source:NCBI gene;Acc:396437]
65. SNRPG ENSGALG00000028409 240.32 1934.44 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
66. LDHB ENSGALG00000035836 237.55 1912.15 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
67. RPL21 ENSGALG00000027035 237.55 1912.15 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
68. ATP5G3 236.17 1901.04 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
69. CRHOA CRHOA 236.17 1901.04
70. RPS8 ENSGALG00000010124 229.27 1845.50 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
71. FKBP4 ENSGALG00000014331 226.51 1823.28 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
72. RPL12 ENSGALG00000008806 225.12 1812.09 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
73. RPL35A ENSGALG00000007611, ENSGALG00000041230 223.74 1800.98 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
74. RPL14 ENSGALG00000043379 222.36 1789.88 ribosomal protein L14
75. COX7C ENSGALG00000027963 220.98 1778.77 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
76. RPLP1 ENSGALG00000030878 219.60 1767.66 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
77. RPL6 ENSGALG00000004818 216.84 1745.44 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
78. H3-IX H3-IX 212.69 1712.04
79. EEF1D 211.31 1700.93 eukaryotic translation elongation factor 1 delta, transcript variant X13
80. ENSGALG00000018384 ENSGALG00000018384 205.79 1656.50
81. EIF1 ENSGALG00000028517 204.41 1645.39 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
82. RPS21 ENSGALG00000005338 197.50 1589.77 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
83. EIF3F ENSGALG00000005326 196.12 1578.66 eukaryotic translation initiation factor 3 subunit F
84. TPT1 ENSGALG00000028872 196.12 1578.66 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
85. RPS3A ENSGALG00000010077 191.98 1545.33 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
86. RPL13 ENSGALG00000006179 189.21 1523.04 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
87. PRDX1 ENSGALG00000010243 183.69 1478.60 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
88. RPL37A ENSGALG00000011472 182.31 1467.50 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
89. BTF3L4 ENSGALG00000010570 180.93 1456.39 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
90. HNRNPDL ENSGALG00000023199 180.93 1456.39 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
91. ERH ENSGALG00000017384 179.55 1445.28 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
92. COX6C ENSGALG00000035996 168.50 1356.33 cytochrome c oxidase subunit 6C [Source:NCBI gene;Acc:420243]
93. YWHAZ ENSGALG00000031387 168.50 1356.33 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
94. HNRNPA3 ENSGALG00000009250 167.12 1345.22 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
95. RPL4 ENSGALG00000007711 165.74 1334.12 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
96. C5ORF13 C5ORF13 164.35 1322.93
97. TCEB3 ENSGALG00000034625 162.97 1311.82 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
98. ENSGALG00000018386 ENSGALG00000018386 160.21 1289.60
99. SLC25A6 ENSGALG00000016691 157.45 1267.39 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
100. H2AFZ ENSGALG00000014023 156.07 1256.28 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA