Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s33.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5209.75 41939.20
2. MT-ATP6 MT-ATP6 5107.71 41117.76
3. MT-ND5 MT-ND5 2829.65 22779.07
4. MT-CYB MT-CYB 2767.02 22274.89
5. gga-mir-3533 ENSGALG00000027736 2061.88 16598.41 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. EEF1A EEF1A 1904.28 15329.71
7. MT-CO1 MT-CO1 1794.17 14443.31
8. gga-mir-3527 gga-mir-3527 1703.25 13711.39
9. MT-ND4 MT-ND4 1619.40 13036.39
10. GAPDH ENSGALG00000014442 1360.78 10954.46 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. MT-ND3 MT-ND3 1354.72 10905.68
12. MT-ND1 MT-ND1 1253.69 10092.38
13. PPIA ENSGALG00000028600 1101.15 8864.41 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 934.46 7522.53 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPS23 ENSGALG00000015617 828.39 6668.65 ribosomal protein S23
16. TMSB4X ENSGALG00000026383 657.66 5294.25 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
17. RPL5 ENSGALG00000005922 633.41 5099.04 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. RPS6 ENSGALG00000015082 616.24 4960.82 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. MDK ENSGALG00000008367 558.66 4497.29 midkine [Source:NCBI gene;Acc:423196]
20. RPS3 ENSGALG00000017330 526.33 4237.03 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
21. RPL8 ENSGALG00000016232 474.81 3822.29 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
22. STMN1 ENSGALG00000001475 460.66 3708.38 stathmin 1 [Source:NCBI gene;Acc:396057]
23. RPL15 ENSGALG00000011290 452.58 3643.33 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
24. CIRBP ENSGALG00000030918 440.46 3545.76 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
25. EIF4G2 ENSGALG00000005587 437.43 3521.37 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
26. RPL7A ENSGALG00000003197 436.42 3513.24 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
27. ATP6V0C ENSGALG00000009229 435.41 3505.11 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
28. RPS4 RPS4 388.94 3131.02
29. RPL7 ENSGALG00000035252 383.89 3090.37 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
30. RPS27A ENSGALG00000036790 376.82 3033.45 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
31. RPS7 ENSGALG00000016392 375.80 3025.24 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
32. RPL26 RPL26 365.70 2943.93
33. RPL18A 355.60 2862.63 ribosomal protein L18a
34. ENSGALG00000002696 ENSGALG00000002696 341.46 2748.80
35. RPL27A ENSGALG00000005948 335.40 2700.02 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
36. RPS10 ENSGALG00000002813 334.39 2691.89 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
37. ENO1 ENSGALG00000002377 331.35 2667.41 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
38. MT-ND2 MT-ND2 330.34 2659.28
39. RPL31 ENSGALG00000016775 328.32 2643.02 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
40. RPL23 ENSGALG00000001634 324.28 2610.50 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
41. RPS16 ENSGALG00000026490 310.14 2496.67 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
42. EEF1B2 ENSGALG00000008590 307.11 2472.28 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
43. CRHOA CRHOA 289.94 2334.06
44. H3-IX H3-IX 289.94 2334.06
45. RPL21 ENSGALG00000027035 280.84 2260.80 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
46. ATP5G3 276.80 2228.28 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
47. NDUFB9 ENSGALG00000042242 276.80 2228.28 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
48. SLC25A6_1 ENSGALG00000016691 273.77 2203.89 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
49. RPL36 ENSGALG00000000474 269.73 2171.36 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
50. RAN ENSGALG00000002569 266.70 2146.97 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
51. RPS20 ENSGALG00000014432 264.68 2130.71 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
52. RPS12 ENSGALG00000013990 263.67 2122.58 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
53. EIF1 ENSGALG00000028517 254.58 2049.40 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
54. RPS11 ENSGALG00000017299 252.56 2033.14 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
55. RPL10A ENSGALG00000002644 242.45 1951.76 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
56. RPL12 ENSGALG00000008806 240.43 1935.49 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
57. RPL32 ENSGALG00000027142 236.39 1902.97 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
58. RPSA 234.37 1886.71 ribosomal protein SA
59. HNRNPDL ENSGALG00000023199 233.36 1878.58 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
60. RPS15A ENSGALG00000006771 233.36 1878.58 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
61. RPS24 ENSGALG00000004871 231.34 1862.32 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
62. TXN ENSGALG00000015704 230.33 1854.19 thioredoxin [Source:NCBI gene;Acc:396437]
63. RPS14 ENSGALG00000004588 228.31 1837.93 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
64. RPL27 ENSGALG00000002837 226.29 1821.67 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
65. HMGN5 ENSGALG00000007131 223.26 1797.27 high mobility group nucleosome binding domain 5, transcript variant X1
66. LDHB ENSGALG00000035836 220.23 1772.88 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
67. RPL35A ENSGALG00000007611, ENSGALG00000041230 220.23 1772.88 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
68. RPS29 ENSGALG00000012229 220.23 1772.88 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
69. ENSGALG00000028992 ENSGALG00000028992 219.22 1764.75
70. H2AFZ ENSGALG00000014023 219.22 1764.75 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
71. RPL37 ENSGALG00000014833 214.17 1724.10 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
72. SNRPE ENSGALG00000000137 213.16 1715.97 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
73. RPL29 ENSGALG00000026978 211.14 1699.71 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
74. ANP32B ENSGALG00000037483 210.13 1691.58 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
75. SNRPG ENSGALG00000028409 210.13 1691.58 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
76. RPS15 ENSGALG00000015195 202.05 1626.53 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
77. CRABP-I ENSGALG00000003193 201.04 1618.40 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
78. ERH ENSGALG00000017384 200.03 1610.27 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
79. HNRNPA3 ENSGALG00000009250 200.03 1610.27 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
80. RPS8 ENSGALG00000010124 198.00 1593.93 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
81. C5ORF13 C5ORF13 195.98 1577.67
82. EIF5A2 ENSGALG00000009309 194.97 1569.54 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
83. BTF3L4 ENSGALG00000010570 192.95 1553.27 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
84. KPNA2 ENSGALG00000003584 191.94 1545.14 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
85. RPLP1 ENSGALG00000030878 190.93 1537.01 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
86. MEIS2 ENSGALG00000039118 186.89 1504.49 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
87. TPT1 ENSGALG00000028872 183.86 1480.10 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
88. CDK1 ENSGALG00000003085 180.83 1455.71 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
89. RPL14 ENSGALG00000043379 180.83 1455.71 ribosomal protein L14
90. YWHAZ ENSGALG00000031387 180.83 1455.71 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
91. ENSGALG00000018384 ENSGALG00000018384 179.82 1447.58
92. EIF3F ENSGALG00000005326 178.81 1439.44 eukaryotic translation initiation factor 3 subunit F
93. RPL23A ENSGALG00000003966 177.80 1431.31 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
94. FKBP4 ENSGALG00000014331 176.79 1423.18 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
95. RPS3A ENSGALG00000010077 176.79 1423.18 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
96. IGF2BP3 ENSGALG00000010961 174.77 1406.92 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
97. COX7C ENSGALG00000027963 173.76 1398.79 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
98. ACTC1 ENSGALG00000009844 170.73 1374.40 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
99. ATP6V1G1 ENSGALG00000007190 170.73 1374.40 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
100. CNN3 ENSGALG00000005597 168.71 1358.14 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA