Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s32.

Sample reads: 124,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 6475.40 52121.43
2. MT-CO3 MT-CO3 6108.15 49165.38
3. MT-ND5 MT-ND5 3610.34 29060.15
4. MT-CYB MT-CYB 2398.52 19306.03
5. gga-mir-3527 gga-mir-3527 2363.83 19026.81
6. MT-ND4 MT-ND4 1978.63 15926.28
7. MT-CO1 MT-CO1 1899.68 15290.80
8. EEF1A EEF1A 1797.99 14472.28
9. gga-mir-3533 ENSGALG00000027736 1638.89 13191.66 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. MT-ND3 MT-ND3 1553.95 12507.97
11. MT-ND1 MT-ND1 1386.48 11159.98
12. GAPDH ENSGALG00000014442 1319.48 10620.69 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. PPIA ENSGALG00000028600 1061.09 8540.87 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 873.28 7029.16 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPS23 ENSGALG00000015617 777.57 6258.77 ribosomal protein S23
16. RPL5 ENSGALG00000005922 742.88 5979.55 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. RPS6 ENSGALG00000015082 649.57 5228.48 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
18. RPL15 ENSGALG00000011290 551.48 4438.94 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. RPL8 ENSGALG00000016232 520.38 4188.61 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. RPS3 ENSGALG00000017330 495.26 3986.42 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
21. MDK ENSGALG00000008367 489.27 3938.21 midkine [Source:NCBI gene;Acc:423196]
22. STMN1 ENSGALG00000001475 458.17 3687.88 stathmin 1 [Source:NCBI gene;Acc:396057]
23. RPL27A ENSGALG00000005948 455.78 3668.64 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
24. RPL23 ENSGALG00000001634 431.85 3476.02 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
25. RPL26 RPL26 424.68 3418.31
26. ENSGALG00000002696 ENSGALG00000002696 412.71 3321.96
27. TMSB4X ENSGALG00000026383 412.71 3321.96 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
28. RPL7A ENSGALG00000003197 409.12 3293.07 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
29. RPS7 ENSGALG00000016392 406.73 3273.83 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
30. EIF4G2 ENSGALG00000005587 376.82 3033.08 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
31. RPS10 ENSGALG00000002813 375.63 3023.50 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
32. RPS4 RPS4 364.86 2936.81
33. RPL18A 357.68 2879.02 ribosomal protein L18a
34. ATP6V0C ENSGALG00000009229 351.70 2830.88 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
35. RPL31 ENSGALG00000016775 345.72 2782.75 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
36. MT-ND2 MT-ND2 344.53 2773.17
37. RPL7 ENSGALG00000035252 343.33 2763.51 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
38. RPS20 ENSGALG00000014432 342.13 2753.85 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
39. RPS27A ENSGALG00000036790 337.35 2715.38 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
40. RPS16 ENSGALG00000026490 333.76 2686.48 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
41. CIRBP ENSGALG00000030918 313.42 2522.76 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
42. ENO1 ENSGALG00000002377 297.87 2397.60 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
43. NDUFB9 ENSGALG00000042242 296.67 2387.94 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
44. RPS29 ENSGALG00000012229 291.89 2349.46 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
45. RPL21 ENSGALG00000027035 272.75 2195.40 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
46. ENSGALG00000028992 ENSGALG00000028992 267.96 2156.85
47. EIF1 ENSGALG00000028517 263.18 2118.37 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
48. RPL37 ENSGALG00000014833 261.98 2108.71 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
49. RPLP1 ENSGALG00000030878 259.59 2089.48 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
50. RPSA 258.39 2079.82 ribosomal protein SA
51. RPL38 ENSGALG00000001465 256.00 2060.58 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
52. RPS11 ENSGALG00000017299 256.00 2060.58 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
53. CRHOA CRHOA 252.41 2031.68
54. RPL10A ENSGALG00000002644 252.41 2031.68 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
55. H3-IX H3-IX 248.82 2002.79
56. SNRPG ENSGALG00000028409 245.24 1973.97 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
57. FKBP4 ENSGALG00000014331 241.65 1945.08 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
58. SLC25A6_1 ENSGALG00000016691 238.06 1916.18 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
59. RPL12 ENSGALG00000008806 236.86 1906.52 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
60. RPL35A ENSGALG00000007611, ENSGALG00000041230 236.86 1906.52 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
61. RPS12 ENSGALG00000013990 236.86 1906.52 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
62. RPL27 ENSGALG00000002837 235.67 1896.94 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
63. RPL32 ENSGALG00000027142 235.67 1896.94 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
64. RAN ENSGALG00000002569 233.27 1877.62 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
65. ATP5G3 230.88 1858.39 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
66. RPL36 ENSGALG00000000474 229.68 1848.73 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
67. RPS15A ENSGALG00000006771 228.49 1839.15 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
68. H2AFZ ENSGALG00000014023 223.70 1800.59 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
69. RPL14 ENSGALG00000043379 223.70 1800.59 ribosomal protein L14
70. RPS15 ENSGALG00000015195 221.31 1781.36 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
71. RPS8 ENSGALG00000010124 220.11 1771.70 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
72. ACTC1 ENSGALG00000009844 212.94 1713.98 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
73. C5ORF13 C5ORF13 211.74 1704.33
74. EEF1B2 ENSGALG00000008590 211.74 1704.33 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
75. ENSGALG00000018384 ENSGALG00000018384 211.74 1704.33
76. BTF3L4 ENSGALG00000010570 209.35 1685.09 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
77. RPL29 ENSGALG00000026978 208.15 1675.43 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
78. ERH ENSGALG00000017384 205.76 1656.19 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
79. HMGN5 ENSGALG00000007131 205.76 1656.19 high mobility group nucleosome binding domain 5, transcript variant X1
80. RPS3A ENSGALG00000010077 205.76 1656.19 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
81. RPS21 ENSGALG00000005338 200.97 1617.64 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
82. TXN ENSGALG00000015704 200.97 1617.64 thioredoxin [Source:NCBI gene;Acc:396437]
83. COX7C ENSGALG00000027963 196.19 1579.16 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
84. RPL13 ENSGALG00000006179 193.80 1559.92 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
85. RPL23A ENSGALG00000003966 193.80 1559.92 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
86. LDHB ENSGALG00000035836 192.60 1550.27 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
87. MIF ENSGALG00000006326 191.40 1540.61 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
88. RPS24 ENSGALG00000004871 183.03 1473.23 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
89. PRDX1 ENSGALG00000010243 181.83 1463.58 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
90. MEIS2 ENSGALG00000039118 180.64 1454.00 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
91. RPL4 ENSGALG00000007711 180.64 1454.00 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
92. RPL6 ENSGALG00000004818 179.44 1444.34 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
93. CDK1 ENSGALG00000003085 175.85 1415.44 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
94. KPNA2 ENSGALG00000003584 175.85 1415.44 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
95. RPS14 ENSGALG00000004588 175.85 1415.44 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
96. ZNF207 ENSGALG00000003454 175.85 1415.44 zinc finger protein 207 [Source:HGNC Symbol;Acc:HGNC:12998]
97. ENSGALG00000018386 ENSGALG00000018386 174.66 1405.86
98. ANP32B ENSGALG00000037483 173.46 1396.20 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
99. EEF1D 171.07 1376.97 eukaryotic translation elongation factor 1 delta, transcript variant X13
100. RPL3 ENSGALG00000012172 166.28 1338.41 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA