Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s29.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 5799.09 46677.60
2. MT-CO3 MT-CO3 5066.61 40781.78
3. MT-ND5 MT-ND5 3459.62 27846.91
4. MT-CYB MT-CYB 2925.45 23547.31
5. gga-mir-3527 gga-mir-3527 2069.70 16659.27
6. MT-CO1 MT-CO1 1928.56 15523.22
7. EEF1A EEF1A 1806.19 14538.25
8. MT-ND1 MT-ND1 1782.96 14351.27
9. MT-ND4 MT-ND4 1749.91 14085.24
10. MT-ND3 MT-ND3 1367.59 11007.90
11. gga-mir-3533 ENSGALG00000027736 1332.75 10727.47 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. GAPDH ENSGALG00000014442 1260.40 10145.12 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. PPIA ENSGALG00000028600 1252.36 10080.40 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. RPS23 ENSGALG00000015617 762.85 6140.27 ribosomal protein S23
15. NME2 ENSGALG00000002932 745.88 6003.68 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. RPL5 ENSGALG00000005922 699.43 5629.80 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. RPL15 ENSGALG00000011290 580.62 4673.48 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
18. RPS6 ENSGALG00000015082 535.07 4306.85 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. MDK ENSGALG00000008367 529.71 4263.70 midkine [Source:NCBI gene;Acc:423196]
20. RPS3 ENSGALG00000017330 509.16 4098.29 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
21. RPL18A 477.90 3846.68 ribosomal protein L18a
22. ATP6V0C ENSGALG00000009229 446.63 3594.98 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
23. RPL8 ENSGALG00000016232 440.38 3544.67 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
24. STMN1 ENSGALG00000001475 416.26 3350.53 stathmin 1 [Source:NCBI gene;Acc:396057]
25. RPL31 ENSGALG00000016775 408.22 3285.81 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
26. TMSB4X ENSGALG00000026383 402.86 3242.67 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
27. EIF4G2 ENSGALG00000005587 401.97 3235.51 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
28. ENSGALG00000002696 ENSGALG00000002696 398.40 3206.77
29. RPL7A ENSGALG00000003197 398.40 3206.77 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
30. RPS7 ENSGALG00000016392 393.93 3170.79 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
31. RPL7 ENSGALG00000035252 389.46 3134.81 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
32. RPL26 RPL26 387.68 3120.48
33. CIRBP ENSGALG00000030918 368.03 2962.32 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
34. RPS27A ENSGALG00000036790 358.20 2883.20 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
35. RPS10 ENSGALG00000002813 351.95 2832.89 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
36. ENO1 ENSGALG00000002377 336.76 2710.62 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
37. RPL23 ENSGALG00000001634 334.98 2696.30 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
38. RPS4 RPS4 332.30 2674.72
39. MT-ND2 MT-ND2 331.40 2667.48
40. H3-IX H3-IX 299.24 2408.62
41. RPL27A ENSGALG00000005948 297.46 2394.29 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
42. SLC25A6_1 ENSGALG00000016691 294.78 2372.72 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
43. EEF1B2 ENSGALG00000008590 281.38 2264.86 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
44. RPS20 ENSGALG00000014432 276.02 2221.72 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
45. RPL12 ENSGALG00000008806 273.34 2200.15 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
46. NDUFB9 ENSGALG00000042242 268.87 2164.17 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
47. RPS16 ENSGALG00000026490 268.87 2164.17 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
48. EIF1 ENSGALG00000028517 264.41 2128.27 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
49. RPS29 ENSGALG00000012229 261.73 2106.70 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
50. TXN ENSGALG00000015704 260.83 2099.45 thioredoxin [Source:NCBI gene;Acc:396437]
51. RPS12 ENSGALG00000013990 259.94 2092.29 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
52. ATP5G3 256.37 2063.55 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
53. SNRPG ENSGALG00000028409 252.79 2034.74 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
54. HNRNPDL ENSGALG00000023199 241.18 1941.29 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
55. EIF3F ENSGALG00000005326 240.29 1934.12 eukaryotic translation initiation factor 3 subunit F
56. RPL32 ENSGALG00000027142 240.29 1934.12 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
57. RPL36 ENSGALG00000000474 238.50 1919.72 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
58. RAN ENSGALG00000002569 234.93 1890.98 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
59. ENSGALG00000028992 ENSGALG00000028992 234.04 1883.82
60. LDHB ENSGALG00000035836 233.14 1876.57 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
61. FKBP4 ENSGALG00000014331 231.36 1862.25 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
62. RPL21 ENSGALG00000027035 231.36 1862.25 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
63. RPS8 ENSGALG00000010124 231.36 1862.25 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
64. H2AFZ ENSGALG00000014023 230.46 1855.00 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
65. RPSA 229.57 1847.84 ribosomal protein SA
66. RPL27 ENSGALG00000002837 228.68 1840.67 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
67. ENSGALG00000018384 ENSGALG00000018384 226.89 1826.27
68. RPL37 ENSGALG00000014833 224.21 1804.69 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
69. CRHOA CRHOA 221.53 1783.12
70. HMGN5 ENSGALG00000007131 221.53 1783.12 high mobility group nucleosome binding domain 5, transcript variant X1
71. RPS24 ENSGALG00000004871 217.96 1754.39 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
72. RPL35A ENSGALG00000007611, ENSGALG00000041230 216.17 1739.98 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
73. RPS11 ENSGALG00000017299 216.17 1739.98 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
74. ANP32B ENSGALG00000037483 209.02 1682.43 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
75. RPS15 ENSGALG00000015195 207.24 1668.10 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
76. ERH ENSGALG00000017384 206.34 1660.86 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
77. RPS15A ENSGALG00000006771 204.56 1646.53 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
78. RPL10A ENSGALG00000002644 202.77 1632.12 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
79. KPNA2 ENSGALG00000003584 200.99 1617.79 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
80. CRABP-I ENSGALG00000003193 199.20 1603.39 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
81. RPS14 ENSGALG00000004588 196.52 1581.81 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
82. EIF4A3 ENSGALG00000008530 195.63 1574.65 eukaryotic translation initiation factor 4A3 [Source:NCBI gene;Acc:416704]
83. RPL14 ENSGALG00000043379 195.63 1574.65 ribosomal protein L14
84. RPLP1 ENSGALG00000030878 195.63 1574.65 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
85. HNRNPA3 ENSGALG00000009250 192.95 1553.08 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
86. RPL38 ENSGALG00000001465 190.27 1531.51 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
87. RPL29 ENSGALG00000026978 189.37 1524.26 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
88. TPT1 ENSGALG00000028872 189.37 1524.26 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
89. NONO ENSGALG00000005507 186.69 1502.69 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
90. CDK1 ENSGALG00000003085 184.01 1481.12 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
91. SNRPE ENSGALG00000000137 184.01 1481.12 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
92. C5ORF13 C5ORF13 179.55 1445.22
93. RPL23A ENSGALG00000003966 176.87 1423.65 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
94. IGF2BP3 ENSGALG00000010961 173.29 1394.83 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
95. MIF ENSGALG00000006326 173.29 1394.83 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
96. RPL4 ENSGALG00000007711 172.40 1387.67 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
97. ATP6V1G1 ENSGALG00000007190 171.51 1380.51 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
98. EEF1D 171.51 1380.51 eukaryotic translation elongation factor 1 delta, transcript variant X13
99. RPS3A ENSGALG00000010077 167.04 1344.53 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
100. LUM ENSGALG00000011271 164.36 1322.95 lumican [Source:NCBI gene;Acc:417891]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA