Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s28.

Sample reads: 124,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5369.00 43216.76
2. MT-ATP6 MT-ATP6 4535.98 36511.52
3. MT-ND5 MT-ND5 3994.75 32154.99
4. MT-CYB MT-CYB 2161.15 17395.77
5. gga-mir-3527 gga-mir-3527 2086.79 16797.22
6. MT-CO1 MT-CO1 1775.23 14289.38
7. gga-mir-3533 ENSGALG00000027736 1771.47 14259.11 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. EEF1A EEF1A 1569.10 12630.18
9. MT-ND4 MT-ND4 1496.62 12046.76
10. MT-ND1 MT-ND1 1347.90 10849.67
11. GAPDH ENSGALG00000014442 1286.71 10357.13 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ND3 MT-ND3 1192.59 9599.53
13. PPIA ENSGALG00000028600 1174.70 9455.53 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 848.08 6826.46 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPS23 ENSGALG00000015617 703.13 5659.71 ribosomal protein S23
16. RPL5 ENSGALG00000005922 632.53 5091.43 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. RPS6 ENSGALG00000015082 546.88 4402.01 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
18. RPL7 ENSGALG00000035252 520.52 4189.83 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
19. RPL15 ENSGALG00000011290 500.76 4030.77 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
20. MDK ENSGALG00000008367 464.99 3742.85 midkine [Source:NCBI gene;Acc:423196]
21. MT-ND2 MT-ND2 464.99 3742.85
22. ENSGALG00000018384 ENSGALG00000018384 460.28 3704.94
23. ATP6V0C ENSGALG00000009229 458.40 3689.80 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
24. RPL8 ENSGALG00000016232 438.63 3530.67 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
25. STMN1 ENSGALG00000001475 417.92 3363.97 stathmin 1 [Source:NCBI gene;Acc:396057]
26. ENSGALG00000002696 ENSGALG00000002696 416.04 3348.84
27. RPL18A 392.51 3159.44 ribosomal protein L18a
28. RPL27A ENSGALG00000005948 382.16 3076.13 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
29. RPL7A ENSGALG00000003197 382.16 3076.13 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
30. TMSB4X ENSGALG00000026383 374.63 3015.51 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
31. RPS10 ENSGALG00000002813 371.80 2992.73 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
32. CIRBP ENSGALG00000030918 366.15 2947.26 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
33. RPS11 ENSGALG00000017299 366.15 2947.26 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
34. RPL31 ENSGALG00000016775 353.92 2848.81 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
35. RPS27A ENSGALG00000036790 353.92 2848.81 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
36. RPL26 RPL26 352.98 2841.25
37. RPS7 ENSGALG00000016392 336.03 2704.81 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
38. EIF4G2 ENSGALG00000005587 333.21 2682.11 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
39. EIF1 ENSGALG00000028517 320.97 2583.59 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
40. ENO1 ENSGALG00000002377 315.33 2538.19 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
41. RPS4 RPS4 311.56 2507.84
42. H3-IX H3-IX 305.91 2462.37
43. RPS20 ENSGALG00000014432 294.62 2371.49 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
44. ATP5G3 271.09 2182.09 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
45. RPS16 ENSGALG00000026490 265.44 2136.61 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
46. NDUFB9 ENSGALG00000042242 261.67 2106.26 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
47. HMGN5 ENSGALG00000007131 258.85 2083.56 high mobility group nucleosome binding domain 5, transcript variant X1
48. RPS29 ENSGALG00000012229 257.91 2076.00 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
49. CRHOA CRHOA 256.97 2068.43
50. TPT1 ENSGALG00000028872 256.97 2068.43 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
51. RPS15A ENSGALG00000006771 256.03 2060.87 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
52. RPL32 ENSGALG00000027142 254.14 2045.65 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
53. SNRPG ENSGALG00000028409 253.20 2038.09 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
54. RPL21 ENSGALG00000027035 251.32 2022.95 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
55. RPL35A ENSGALG00000007611, ENSGALG00000041230 244.73 1969.91 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
56. RPS3 ENSGALG00000017330 244.73 1969.91 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
57. RAN ENSGALG00000002569 242.85 1954.78 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
58. RPSA 240.96 1939.56 ribosomal protein SA
59. RPLP1 ENSGALG00000030878 236.26 1901.73 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
60. EEF1B2 ENSGALG00000008590 233.43 1878.95 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
61. RPS14 ENSGALG00000004588 233.43 1878.95 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
62. ENSGALG00000028992 ENSGALG00000028992 231.55 1863.82
63. ANP32B ENSGALG00000037483 230.61 1856.25 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
64. RPL23 ENSGALG00000001634 229.67 1848.69 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
65. SLC25A6_1 ENSGALG00000016691 229.67 1848.69 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
66. H2AFZ ENSGALG00000014023 224.02 1803.21 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
67. RPL12 ENSGALG00000008806 224.02 1803.21 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
68. ACTC1 ENSGALG00000009844 222.14 1788.07 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
69. RPL27 ENSGALG00000002837 221.20 1780.51 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
70. RPL38 ENSGALG00000001465 221.20 1780.51 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
71. RPS21 ENSGALG00000005338 221.20 1780.51 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
72. ENSGALG00000018386 ENSGALG00000018386 219.32 1765.38
73. RPL14 ENSGALG00000043379 219.32 1765.38 ribosomal protein L14
74. CDK1 ENSGALG00000003085 217.43 1750.16 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
75. LDHB ENSGALG00000035836 217.43 1750.16 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
76. RPL37 ENSGALG00000014833 215.55 1735.03 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
77. FKBP4 ENSGALG00000014331 214.61 1727.46 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
78. RPL36 ENSGALG00000000474 212.73 1712.33 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
79. HNRNPDL ENSGALG00000023199 208.96 1681.98 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
80. TXN ENSGALG00000015704 207.08 1666.85 thioredoxin [Source:NCBI gene;Acc:396437]
81. HMGN2 HMGN2 203.31 1636.51
82. RPL10A ENSGALG00000002644 203.31 1636.51 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
83. RPS12 ENSGALG00000013990 203.31 1636.51 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
84. RPS8 ENSGALG00000010124 196.73 1583.54 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
85. ERH ENSGALG00000017384 193.90 1560.76 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
86. RPS15 ENSGALG00000015195 192.96 1553.20 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
87. RPL4 ENSGALG00000007711 192.02 1545.63 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
88. RPS3A ENSGALG00000010077 192.02 1545.63 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
89. EEF1D 190.14 1530.50 eukaryotic translation elongation factor 1 delta, transcript variant X13
90. MIF ENSGALG00000006326 188.25 1515.28 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
91. RPL23A ENSGALG00000003966 188.25 1515.28 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
92. EIF3F ENSGALG00000005326 187.31 1507.72 eukaryotic translation initiation factor 3 subunit F
93. RPS24 ENSGALG00000004871 187.31 1507.72 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
94. PRDX1 ENSGALG00000010243 184.49 1485.02 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
95. EIF5A2 ENSGALG00000009309 180.72 1454.67 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
96. BTF3L4 ENSGALG00000010570 176.02 1416.84 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
97. KPNA2 ENSGALG00000003584 176.02 1416.84 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
98. RPL3 ENSGALG00000012172 174.13 1401.63 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
99. TCF12 ENSGALG00000004304 174.13 1401.63 transcription factor 12 [Source:NCBI gene;Acc:396334]
100. HMGB1 ENSGALG00000042875 173.19 1394.06 high mobility group box 1 [Source:NCBI gene;Acc:395724]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA