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Experiment Chicken_E3_anterior_slice_3, section s27.

Sample reads: 124,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 5103.77 41082.35
2. MT-CO3 MT-CO3 5001.07 40255.67
3. MT-ND5 MT-ND5 3499.73 28170.77
4. MT-CYB MT-CYB 2322.37 18693.71
5. gga-mir-3527 gga-mir-3527 1955.26 15738.69
6. EEF1A EEF1A 1710.15 13765.70
7. MT-CO1 MT-CO1 1598.37 12865.94
8. gga-mir-3533 ENSGALG00000027736 1588.72 12788.26 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. MT-ND4 MT-ND4 1537.66 12377.26
10. PPIA ENSGALG00000028600 1327.72 10687.37 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
11. GAPDH ENSGALG00000014442 1297.65 10445.32 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ND1 MT-ND1 1188.70 9568.34
13. MT-ND3 MT-ND3 1054.23 8485.93
14. NME2 ENSGALG00000002932 821.60 6613.40 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 671.24 5403.09 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPS23 ENSGALG00000015617 663.86 5343.68 ribosomal protein S23
17. RPS6 ENSGALG00000015082 552.08 4443.92 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
18. RPL15 ENSGALG00000011290 550.95 4434.82 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. EIF4G2 ENSGALG00000005587 469.81 3781.69 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
20. RPL18A 460.16 3704.02 ribosomal protein L18a
21. RPS3 ENSGALG00000017330 446.54 3594.38 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
22. ENSGALG00000002696 ENSGALG00000002696 432.36 3480.24
23. RPL8 ENSGALG00000016232 421.01 3388.88 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
24. RPL7 ENSGALG00000035252 419.88 3379.79 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
25. ATP6V0C ENSGALG00000009229 418.74 3370.61 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
26. RPL27A ENSGALG00000005948 415.90 3347.75 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
27. RPS7 ENSGALG00000016392 414.20 3334.07 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
28. MDK ENSGALG00000008367 405.69 3265.57 midkine [Source:NCBI gene;Acc:423196]
29. CIRBP ENSGALG00000030918 397.75 3201.65 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
30. STMN1 ENSGALG00000001475 372.21 2996.07 stathmin 1 [Source:NCBI gene;Acc:396057]
31. RPL26 RPL26 358.03 2881.93
32. ENO1 ENSGALG00000002377 357.46 2877.34 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
33. RPS27A ENSGALG00000036790 355.76 2863.66 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
34. TMSB4X ENSGALG00000026383 355.19 2859.07 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
35. RPL31 ENSGALG00000016775 348.95 2808.84 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
36. RPL7A ENSGALG00000003197 337.60 2717.48 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
37. RPS11 ENSGALG00000017299 318.31 2562.21 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
38. MT-ND2 MT-ND2 316.04 2543.94
39. RPS12 ENSGALG00000013990 306.40 2466.34 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
40. RPS10 ENSGALG00000002813 303.56 2443.48 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
41. RPS4 RPS4 292.21 2352.12
42. EEF1B2 ENSGALG00000008590 275.19 2215.12 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
43. H3-IX H3-IX 275.19 2215.12
44. FKBP4 ENSGALG00000014331 274.05 2205.94 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
45. RPLP1 ENSGALG00000030878 274.05 2205.94 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
46. RPS20 ENSGALG00000014432 271.78 2187.67 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
47. RPS16 ENSGALG00000026490 271.22 2183.16 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
48. RPL32 ENSGALG00000027142 266.11 2142.03 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
49. ANP32B ENSGALG00000037483 262.14 2110.07 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
50. EIF1 ENSGALG00000028517 262.14 2110.07 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
51. CRHOA CRHOA 259.30 2087.21
52. ATP5G3 257.60 2073.53 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
53. RPL35A ENSGALG00000007611, ENSGALG00000041230 253.63 2041.57 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
54. RPL23 ENSGALG00000001634 252.49 2032.40 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
55. RPL21 ENSGALG00000027035 251.36 2023.30 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
56. H2AFZ ENSGALG00000014023 247.95 1995.85 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
57. HMGN5 ENSGALG00000007131 247.39 1991.34 high mobility group nucleosome binding domain 5, transcript variant X1
58. NDUFB9 ENSGALG00000042242 246.25 1982.17 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
59. RPSA 238.88 1922.84 ribosomal protein SA
60. SLC25A6_1 ENSGALG00000016691 238.31 1918.26 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
61. RAN ENSGALG00000002569 237.17 1909.08 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
62. ENSGALG00000028992 ENSGALG00000028992 233.77 1881.71
63. ENSGALG00000018384 ENSGALG00000018384 230.36 1854.26
64. RPL38 ENSGALG00000001465 229.80 1849.75 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
65. RPS24 ENSGALG00000004871 219.58 1767.49 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
66. RPS8 ENSGALG00000010124 217.31 1749.22 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
67. RPS15A ENSGALG00000006771 216.75 1744.71 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
68. MIF ENSGALG00000006326 209.37 1685.31 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
69. RPL37 ENSGALG00000014833 209.37 1685.31 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
70. RPS29 ENSGALG00000012229 209.37 1685.31 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
71. RPS14 ENSGALG00000004588 208.80 1680.72 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
72. SNRPG ENSGALG00000028409 205.40 1653.35 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
73. EIF3F ENSGALG00000005326 202.56 1630.49 eukaryotic translation initiation factor 3 subunit F
74. RPL27 ENSGALG00000002837 200.86 1616.80 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
75. HNRNPDL ENSGALG00000023199 200.29 1612.22 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
76. RPL12 ENSGALG00000008806 200.29 1612.22 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
77. RPL14 ENSGALG00000043379 193.48 1557.40 ribosomal protein L14
78. HMGN2 HMGN2 192.92 1552.89
79. TPT1 ENSGALG00000028872 191.78 1543.72 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
80. ACTC1 ENSGALG00000009844 191.21 1539.13 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
81. LUM ENSGALG00000011271 191.21 1539.13 lumican [Source:NCBI gene;Acc:417891]
82. RPL4 ENSGALG00000007711 190.65 1534.62 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
83. RPL10A ENSGALG00000002644 188.94 1520.86 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
84. KPNA2 ENSGALG00000003584 187.24 1507.17 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
85. TXN ENSGALG00000015704 186.11 1498.08 thioredoxin [Source:NCBI gene;Acc:396437]
86. RPL36 ENSGALG00000000474 185.54 1493.49 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
87. EIF5A2 ENSGALG00000009309 183.27 1475.22 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
88. TCF12 ENSGALG00000004304 181.57 1461.53 transcription factor 12 [Source:NCBI gene;Acc:396334]
89. ENSGALG00000018386 ENSGALG00000018386 179.87 1447.85
90. ERH ENSGALG00000017384 179.87 1447.85 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
91. CDK1 ENSGALG00000003085 179.30 1443.26 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
92. LDHB ENSGALG00000035836 179.30 1443.26 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
93. NONO ENSGALG00000005507 179.30 1443.26 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
94. RPL23A ENSGALG00000003966 178.73 1438.67 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
95. COX7C ENSGALG00000027963 178.16 1434.08 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
96. IGF2BP3 ENSGALG00000010961 177.03 1424.99 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
97. BTF3L4 ENSGALG00000010570 176.46 1420.40 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
98. EEF1D 175.33 1411.30 eukaryotic translation elongation factor 1 delta, transcript variant X13
99. MT-ND6 MT-ND6 175.33 1411.30
100. CRABP-I ENSGALG00000003193 173.62 1397.54 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA