Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s26.

Sample reads: 124,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 5392.09 43404.78
2. MT-CO3 MT-CO3 4561.79 36721.11
3. MT-ND5 MT-ND5 4099.76 33001.90
4. MT-CYB MT-CYB 2408.40 19386.93
5. gga-mir-3527 gga-mir-3527 1997.38 16078.34
6. MT-CO1 MT-CO1 1881.12 15142.48
7. MT-ND4 MT-ND4 1702.61 13705.52
8. gga-mir-3533 ENSGALG00000027736 1692.11 13621.00 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. MT-ND1 MT-ND1 1599.10 12872.30
10. EEF1A EEF1A 1589.35 12793.81
11. GAPDH ENSGALG00000014442 1489.59 11990.77 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. PPIA ENSGALG00000028600 1326.08 10674.57 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
13. MT-ND3 MT-ND3 972.81 7830.84
14. RPS23 ENSGALG00000015617 707.30 5693.56 ribosomal protein S23
15. NME2 ENSGALG00000002932 628.54 5059.57 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. RPL5 ENSGALG00000005922 559.54 4504.14 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. RPL15 ENSGALG00000011290 552.79 4449.80 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
18. RPS6 ENSGALG00000015082 543.03 4371.24 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. MDK ENSGALG00000008367 480.03 3864.10 midkine [Source:NCBI gene;Acc:423196]
20. RPL8 ENSGALG00000016232 465.78 3749.40 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. EIF4G2 ENSGALG00000005587 454.53 3658.84 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
22. CIRBP ENSGALG00000030918 435.03 3501.87 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
23. RPS3 ENSGALG00000017330 432.03 3477.72 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
24. RPL18A 418.53 3369.05 ribosomal protein L18a
25. RPL7 ENSGALG00000035252 411.78 3314.71 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
26. TMSB4X ENSGALG00000026383 410.28 3302.64 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
27. STMN1 ENSGALG00000001475 406.53 3272.45 stathmin 1 [Source:NCBI gene;Acc:396057]
28. MT-ND2 MT-ND2 398.28 3206.04
29. RPL27A ENSGALG00000005948 398.28 3206.04 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. RPS7 ENSGALG00000016392 396.78 3193.97 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
31. ATP6V0C ENSGALG00000009229 387.77 3121.44 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
32. ENSGALG00000002696 ENSGALG00000002696 371.27 2988.62
33. RPL7A ENSGALG00000003197 369.77 2976.54 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
34. RPL26 RPL26 345.77 2783.35
35. RPS27A ENSGALG00000036790 340.52 2741.09 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
36. RPS4 RPS4 330.77 2662.60
37. ENO1 ENSGALG00000002377 303.77 2445.26 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
38. EIF1 ENSGALG00000028517 293.27 2360.74 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
39. ENSGALG00000018384 ENSGALG00000018384 293.27 2360.74
40. RPS10 ENSGALG00000002813 289.52 2330.55 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
41. RPL31 ENSGALG00000016775 288.77 2324.52 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
42. RPS15 ENSGALG00000015195 278.27 2239.99 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
43. RPS11 ENSGALG00000017299 270.02 2173.58 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
44. RPL23 ENSGALG00000001634 255.02 2052.84 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
45. CRHOA CRHOA 252.77 2034.73
46. RPS16 ENSGALG00000026490 249.77 2010.58 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
47. H3-IX H3-IX 249.02 2004.54
48. SLC25A6_1 ENSGALG00000016691 248.27 1998.50 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
49. EEF1B2 ENSGALG00000008590 247.52 1992.47 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
50. RAN ENSGALG00000002569 246.77 1986.43 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
51. ANP32B ENSGALG00000037483 244.52 1968.32 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
52. HMGN5 ENSGALG00000007131 244.52 1968.32 high mobility group nucleosome binding domain 5, transcript variant X1
53. RPS8 ENSGALG00000010124 242.27 1950.20 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
54. RPS12 ENSGALG00000013990 240.77 1938.13 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
55. SNRPG ENSGALG00000028409 240.77 1938.13 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
56. RPS20 ENSGALG00000014432 237.02 1907.94 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
57. ATP5G3 228.76 1841.45 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
58. RPL32 ENSGALG00000027142 228.76 1841.45 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
59. RPSA 228.76 1841.45 ribosomal protein SA
60. FKBP4 ENSGALG00000014331 225.01 1811.27 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
61. MIF ENSGALG00000006326 224.26 1805.23 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
62. RPS24 ENSGALG00000004871 224.26 1805.23 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
63. H2AFZ ENSGALG00000014023 222.01 1787.12 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
64. RPL12 ENSGALG00000008806 221.26 1781.08 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
65. RPL21 ENSGALG00000027035 220.51 1775.04 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
66. CRABP-I ENSGALG00000003193 217.51 1750.89 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
67. RPL37 ENSGALG00000014833 211.51 1702.60 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
68. EIF5A2 ENSGALG00000009309 208.51 1678.45 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
69. ERH ENSGALG00000017384 206.26 1660.33 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
70. RPL38 ENSGALG00000001465 205.51 1654.30 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
71. CDK1 ENSGALG00000003085 204.76 1648.26 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
72. EEF1D 204.76 1648.26 eukaryotic translation elongation factor 1 delta, transcript variant X13
73. RPS29 ENSGALG00000012229 204.76 1648.26 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
74. RPL13 ENSGALG00000006179 204.01 1642.22 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
75. RPS15A ENSGALG00000006771 204.01 1642.22 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
76. EIF3F ENSGALG00000005326 202.51 1630.15 eukaryotic translation initiation factor 3 subunit F
77. HMGN2 HMGN2 201.76 1624.11
78. RPL14 ENSGALG00000043379 201.01 1618.07 ribosomal protein L14
79. TPT1 ENSGALG00000028872 201.01 1618.07 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
80. HNRNPDL ENSGALG00000023199 200.26 1612.04 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
81. LDHB ENSGALG00000035836 199.51 1606.00 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
82. RPLP1 ENSGALG00000030878 199.51 1606.00 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
83. LUM ENSGALG00000011271 197.26 1587.89 lumican [Source:NCBI gene;Acc:417891]
84. RPS14 ENSGALG00000004588 196.51 1581.85 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
85. ENSGALG00000018386 ENSGALG00000018386 195.76 1575.81
86. ENSGALG00000028992 ENSGALG00000028992 191.26 1539.59
87. RPL10A ENSGALG00000002644 191.26 1539.59 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
88. TCF12 ENSGALG00000004304 191.26 1539.59 transcription factor 12 [Source:NCBI gene;Acc:396334]
89. RPL4 ENSGALG00000007711 190.51 1533.55 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
90. RPL36 ENSGALG00000000474 189.01 1521.48 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
91. RPL35A ENSGALG00000007611, ENSGALG00000041230 184.51 1485.25 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
92. SNRPE ENSGALG00000000137 180.01 1449.03 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
93. KPNA2 ENSGALG00000003584 176.26 1418.84 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
94. RPL23A ENSGALG00000003966 176.26 1418.84 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
95. RPL27 ENSGALG00000002837 176.26 1418.84 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
96. TXN ENSGALG00000015704 176.26 1418.84 thioredoxin [Source:NCBI gene;Acc:396437]
97. RPL6 ENSGALG00000004818 174.01 1400.73 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
98. NDUFB9 ENSGALG00000042242 173.26 1394.69 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
99. HNRNPA3 ENSGALG00000009250 171.76 1382.62 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
100. YWHAZ ENSGALG00000031387 171.76 1382.62 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA