Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s25.

Sample reads: 124,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 7960.00 64073.28
2. MT-CO3 MT-CO3 5224.48 42053.96
3. MT-ND5 MT-ND5 4574.99 36825.95
4. MT-CYB MT-CYB 2401.64 19331.78
5. MT-CO1 MT-CO1 2104.86 16942.87
6. gga-mir-3527 gga-mir-3527 1925.08 15495.75
7. MT-ND4 MT-ND4 1879.99 15132.80
8. MT-ND1 MT-ND1 1768.70 14236.99
9. EEF1A EEF1A 1636.86 13175.75
10. gga-mir-3533 ENSGALG00000027736 1622.59 13060.89 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. GAPDH ENSGALG00000014442 1263.03 10166.64 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ND3 MT-ND3 1259.61 10139.11
13. PPIA ENSGALG00000028600 1186.55 9551.02 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 909.75 7322.95 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPS23 ENSGALG00000015617 747.09 6013.63 ribosomal protein S23
16. RPL5 ENSGALG00000005922 562.74 4529.72 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. RPS6 ENSGALG00000015082 509.66 4102.46 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
18. RPL15 ENSGALG00000011290 498.82 4015.21 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. RPS3 ENSGALG00000017330 473.71 3813.08 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
20. ATP6V0C ENSGALG00000009229 436.61 3514.45 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
21. STMN1 ENSGALG00000001475 433.19 3486.92 stathmin 1 [Source:NCBI gene;Acc:396057]
22. MDK ENSGALG00000008367 428.62 3450.14 midkine [Source:NCBI gene;Acc:423196]
23. EIF4G2 ENSGALG00000005587 418.35 3367.47 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
24. RPL8 ENSGALG00000016232 414.92 3339.86 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
25. RPS7 ENSGALG00000016392 404.08 3252.60 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
26. RPL7 ENSGALG00000035252 397.80 3202.05 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
27. RPL27A ENSGALG00000005948 397.23 3197.47 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. ENSGALG00000002696 ENSGALG00000002696 384.10 3091.78
29. TMSB4X ENSGALG00000026383 368.12 2963.15 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
30. RPL23 ENSGALG00000001634 356.71 2871.30 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
31. RPL18A 355.57 2862.13 ribosomal protein L18a
32. RPL26 RPL26 351.00 2825.34
33. RPS4 RPS4 345.86 2783.97
34. ENO1 ENSGALG00000002377 341.87 2751.85 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
35. CIRBP ENSGALG00000030918 340.16 2738.09 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
36. RPS27A ENSGALG00000036790 339.59 2733.50 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
37. RPL31 ENSGALG00000016775 337.30 2715.06 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
38. RPS11 ENSGALG00000017299 331.60 2669.18 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
39. RPL7A ENSGALG00000003197 329.88 2655.34 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
40. RPS16 ENSGALG00000026490 329.31 2650.75 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
41. RPS10 ENSGALG00000002813 315.61 2540.47 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
42. EIF1 ENSGALG00000028517 311.62 2508.36 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
43. CRABP-I ENSGALG00000003193 299.06 2407.26 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
44. MT-ND2 MT-ND2 296.21 2384.31
45. RPS20 ENSGALG00000014432 278.52 2241.92 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
46. H3-IX H3-IX 260.25 2094.86
47. RPS15 ENSGALG00000015195 248.84 2003.01 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
48. RPS29 ENSGALG00000012229 247.13 1989.25 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
49. TXN ENSGALG00000015704 247.13 1989.25 thioredoxin [Source:NCBI gene;Acc:396437]
50. H2AFZ ENSGALG00000014023 245.99 1980.07 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
51. SNRPG ENSGALG00000028409 245.41 1975.40 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
52. ENSGALG00000028992 ENSGALG00000028992 243.13 1957.05
53. ATP5G3 240.85 1938.70 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
54. RPL32 ENSGALG00000027142 239.14 1924.94 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
55. RPL21 ENSGALG00000027035 238.57 1920.35 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
56. RPL37 ENSGALG00000014833 238.00 1915.76 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
57. FKBP4 ENSGALG00000014331 234.57 1888.15 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
58. RPL27 ENSGALG00000002837 231.15 1860.62 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
59. SLC25A6_1 ENSGALG00000016691 230.58 1856.03 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
60. RPS12 ENSGALG00000013990 230.00 1851.36 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
61. RPS15A ENSGALG00000006771 228.86 1842.19 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
62. NDUFB9 ENSGALG00000042242 224.30 1805.48 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
63. EEF1B2 ENSGALG00000008590 223.16 1796.31 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
64. EIF3F ENSGALG00000005326 222.01 1787.05 eukaryotic translation initiation factor 3 subunit F
65. MIF ENSGALG00000006326 222.01 1787.05 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
66. CRHOA CRHOA 220.87 1777.87
67. LDHB ENSGALG00000035836 219.16 1764.11 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
68. RPL12 ENSGALG00000008806 217.45 1750.34 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
69. RPSA 215.74 1736.58 ribosomal protein SA
70. RPL38 ENSGALG00000001465 214.02 1722.73 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
71. RPLP1 ENSGALG00000030878 212.31 1708.97 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
72. RPS24 ENSGALG00000004871 212.31 1708.97 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
73. RAN ENSGALG00000002569 210.60 1695.21 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
74. ANP32B ENSGALG00000037483 205.46 1653.83 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
75. RPL23A ENSGALG00000003966 205.46 1653.83 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
76. HMGN5 ENSGALG00000007131 204.32 1644.65 high mobility group nucleosome binding domain 5, transcript variant X1
77. HBG1 HBG1 203.75 1640.07
78. HNRNPDL ENSGALG00000023199 202.04 1626.30 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
79. RPL10A ENSGALG00000002644 202.04 1626.30 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
80. RPL14 ENSGALG00000043379 202.04 1626.30 ribosomal protein L14
81. RPS8 ENSGALG00000010124 201.47 1621.71 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
82. RPL4 ENSGALG00000007711 196.90 1584.93 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
83. RPL6 ENSGALG00000004818 196.90 1584.93 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
84. RPL35A ENSGALG00000007611, ENSGALG00000041230 194.62 1566.58 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
85. ERH ENSGALG00000017384 192.91 1552.81 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
86. RPL36 ENSGALG00000000474 191.77 1543.63 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
87. RPS14 ENSGALG00000004588 190.62 1534.38 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
88. ENSGALG00000018384 ENSGALG00000018384 182.63 1470.06
89. SNRPE ENSGALG00000000137 182.06 1465.47 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
90. HBE 181.49 1460.89 hemoglobin subunit epsilon
91. KPNA2 ENSGALG00000003584 180.92 1456.30 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
92. RPS3A ENSGALG00000010077 179.78 1447.12 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
93. RPL29 ENSGALG00000026978 175.21 1410.34 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
94. RPL13 ENSGALG00000006179 168.37 1355.28 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
95. COX7C ENSGALG00000027963 167.80 1350.69 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
96. HNRNPA3 ENSGALG00000009250 167.80 1350.69 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
97. NONO ENSGALG00000005507 166.65 1341.43 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
98. CDK1 ENSGALG00000003085 165.51 1332.26 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
99. ACTC1 ENSGALG00000009844 162.66 1309.32 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
100. TPT1 ENSGALG00000028872 161.52 1300.14 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA