Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s21.

Sample reads: 124,253. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 4653.51 37452.61
2. MT-CO3 MT-CO3 4572.42 36799.97
3. MT-ND5 MT-ND5 3021.26 24315.85
4. MT-CYB MT-CYB 1924.86 15491.75
5. MT-CO1 MT-CO1 1895.95 15259.08
6. EEF1A EEF1A 1686.54 13573.69
7. gga-mir-3533 ENSGALG00000027736 1606.87 12932.49 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. GAPDH ENSGALG00000014442 1537.77 12376.36 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. gga-mir-3527 gga-mir-3527 1517.33 12211.85
10. MT-ND4 MT-ND4 1415.79 11394.63
11. PPIA ENSGALG00000028600 1139.40 9170.17 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
12. MT-ND1 MT-ND1 1082.29 8710.54
13. NME2 ENSGALG00000002932 1046.33 8421.12 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. MT-ND3 MT-ND3 985.70 7933.16
15. RPS23 ENSGALG00000015617 695.21 5595.22 ribosomal protein S23
16. RPL5 ENSGALG00000005922 655.72 5277.40 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. RPS6 ENSGALG00000015082 540.09 4346.78 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
18. CRABP-I ENSGALG00000003193 530.22 4267.34 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
19. STMN1 ENSGALG00000001475 493.55 3972.21 stathmin 1 [Source:NCBI gene;Acc:396057]
20. ATP6V0C ENSGALG00000009229 482.98 3887.14 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
21. RPS3 ENSGALG00000017330 482.27 3881.43 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
22. RPL8 ENSGALG00000016232 479.45 3858.73 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
23. ENO1 ENSGALG00000002377 465.35 3745.25 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
24. RPS7 ENSGALG00000016392 459.71 3699.86 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
25. TMSB4X ENSGALG00000026383 452.66 3643.12 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
26. EIF4G2 ENSGALG00000005587 449.13 3614.71 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
27. RPL15 ENSGALG00000011290 434.33 3495.60 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
28. RPL18A 432.92 3484.25 ribosomal protein L18a
29. RPL23 ENSGALG00000001634 432.21 3478.53 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
30. RPL7A ENSGALG00000003197 420.23 3382.12 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. ENSGALG00000002696 ENSGALG00000002696 406.12 3268.55
32. MDK ENSGALG00000008367 393.43 3166.42 midkine [Source:NCBI gene;Acc:423196]
33. RPL27A ENSGALG00000005948 383.56 3086.99 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
34. RPL26 RPL26 378.63 3047.31
35. RPL7 ENSGALG00000035252 378.63 3047.31 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
36. RPS4 RPS4 376.51 3030.25
37. CIRBP ENSGALG00000030918 359.59 2894.07 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
38. RPS27A ENSGALG00000036790 358.18 2882.72 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
39. RPL31 ENSGALG00000016775 337.73 2718.14 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
40. RPS16 ENSGALG00000026490 336.32 2706.79 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
41. EIF1 ENSGALG00000028517 326.45 2627.35 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
42. RPS10 ENSGALG00000002813 314.46 2530.85 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
43. H3-IX H3-IX 303.89 2445.78
44. RAN ENSGALG00000002569 301.77 2428.72 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
45. LDHB ENSGALG00000035836 301.07 2423.09 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
46. SLC25A6_1 ENSGALG00000016691 293.31 2360.63 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
47. RPS11 ENSGALG00000017299 270.75 2179.06 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
48. FKBP4 ENSGALG00000014331 267.93 2156.37 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
49. H2AFZ ENSGALG00000014023 267.93 2156.37 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
50. ATP5G3 265.81 2139.31 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
51. RPL21 ENSGALG00000027035 265.81 2139.31 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
52. MT-ND2 MT-ND2 265.11 2133.67
53. RPS12 ENSGALG00000013990 262.29 2110.98 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
54. SNRPG ENSGALG00000028409 260.88 2099.63 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
55. RPS15A ENSGALG00000006771 260.17 2093.91 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
56. RPS20 ENSGALG00000014432 258.06 2076.93 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
57. TXN ENSGALG00000015704 255.94 2059.87 thioredoxin [Source:NCBI gene;Acc:396437]
58. HMGN5 ENSGALG00000007131 255.24 2054.24 high mobility group nucleosome binding domain 5, transcript variant X1
59. RPL35A ENSGALG00000007611, ENSGALG00000041230 254.53 2048.52 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
60. RPS24 ENSGALG00000004871 253.83 2042.89 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
61. EEF1B2 ENSGALG00000008590 252.42 2031.54 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
62. ENSGALG00000018384 ENSGALG00000018384 252.42 2031.54
63. ERH ENSGALG00000017384 251.01 2020.19 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
64. ANP32B ENSGALG00000037483 249.60 2008.84 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
65. CRHOA CRHOA 246.78 1986.15
66. RPL32 ENSGALG00000027142 239.02 1923.69 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
67. RPLP1 ENSGALG00000030878 239.02 1923.69 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
68. MIF ENSGALG00000006326 237.61 1912.34 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
69. RPS29 ENSGALG00000012229 232.68 1872.67 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
70. NDUFB9 ENSGALG00000042242 230.56 1855.60 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
71. RPL27 ENSGALG00000002837 229.86 1849.97 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
72. HNRNPDL ENSGALG00000023199 227.74 1832.91 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
73. RPS14 ENSGALG00000004588 227.03 1827.19 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
74. RPL29 ENSGALG00000026978 224.92 1810.21 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
75. ENSGALG00000028992 ENSGALG00000028992 213.64 1719.43
76. RPL37 ENSGALG00000014833 210.82 1696.73 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
77. KPNA2 ENSGALG00000003584 209.41 1685.38 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
78. RPL14 ENSGALG00000043379 208.70 1679.67 ribosomal protein L14
79. RPL23A ENSGALG00000003966 206.59 1662.69 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
80. EIF3F ENSGALG00000005326 205.88 1656.97 eukaryotic translation initiation factor 3 subunit F
81. RPL36 ENSGALG00000000474 205.88 1656.97 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
82. SNRPE ENSGALG00000000137 205.18 1651.34 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
83. RPL3 ENSGALG00000012172 203.06 1634.28 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
84. RPSA 202.36 1628.64 ribosomal protein SA
85. CDK1 ENSGALG00000003085 198.13 1594.60 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
86. RPS8 ENSGALG00000010124 196.01 1577.54 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
87. ACTC1 ENSGALG00000009844 195.31 1571.90 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
88. RPL12 ENSGALG00000008806 192.49 1549.21 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
89. HNRNPA3 ENSGALG00000009250 191.78 1543.49 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
90. HSPE1 ENSGALG00000009070 191.08 1537.86 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
91. BTF3L4 ENSGALG00000010570 189.67 1526.51 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
92. RPL38 ENSGALG00000001465 189.67 1526.51 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
93. IGF2BP3 ENSGALG00000010961 182.61 1469.69 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
94. RPL10A ENSGALG00000002644 182.61 1469.69 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
95. NONO ENSGALG00000005507 180.50 1452.71 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
96. RPL4 ENSGALG00000007711 180.50 1452.71 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
97. COX7C ENSGALG00000027963 178.38 1435.65 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
98. RPS3A ENSGALG00000010077 178.38 1435.65 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
99. TPT1 ENSGALG00000028872 175.56 1412.95 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
100. ATP6V1G1 ENSGALG00000007190 174.86 1407.32 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA