Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s16.

Sample reads: 124,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4889.51 39358.72
2. MT-ATP6 MT-ATP6 4400.56 35422.85
3. MT-ND5 MT-ND5 2732.75 21997.61
4. MT-CYB MT-CYB 2196.44 17680.52
5. gga-mir-3527 gga-mir-3527 2091.48 16835.63
6. MT-CO1 MT-CO1 1962.20 15794.97
7. GAPDH ENSGALG00000014442 1957.08 15753.76 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
8. MT-ND4 MT-ND4 1789.41 14404.08
9. EEF1A EEF1A 1744.61 14043.46
10. MT-ND3 MT-ND3 1537.25 12374.28
11. MT-ND1 MT-ND1 1300.46 10468.21
12. PPIA ENSGALG00000028600 1045.74 8417.81 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
13. NME2 ENSGALG00000002932 971.50 7820.21 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. gga-mir-3533 ENSGALG00000027736 922.86 7428.68 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
15. RPS23 ENSGALG00000015617 668.15 5378.36 ribosomal protein S23
16. RPS6 ENSGALG00000015082 620.79 4997.13 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
17. RPL5 ENSGALG00000005922 619.51 4986.82 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. CRABP-I ENSGALG00000003193 559.35 4502.56 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
19. RPL15 ENSGALG00000011290 542.71 4368.61 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
20. ENO1 ENSGALG00000002377 532.47 4286.18 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
21. RPL8 ENSGALG00000016232 526.07 4234.67 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
22. ENSGALG00000002696 ENSGALG00000002696 482.55 3884.35
23. RPL7A ENSGALG00000003197 477.43 3843.13 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
24. TMSB4X ENSGALG00000026383 469.75 3781.31 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
25. RPL26 RPL26 468.47 3771.01
26. RPS3 ENSGALG00000017330 462.07 3719.49 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
27. RPL7 ENSGALG00000035252 450.55 3626.76 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
28. RPS7 ENSGALG00000016392 431.35 3472.21 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
29. RPL27A ENSGALG00000005948 427.51 3441.29 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. RPL18A 422.39 3400.08 ribosomal protein L18a
31. EIF4G2 ENSGALG00000005587 414.71 3338.26 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
32. CIRBP ENSGALG00000030918 408.31 3286.74 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
33. RPL23 ENSGALG00000001634 401.91 3235.22 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
34. STMN1 ENSGALG00000001475 400.63 3224.92 stathmin 1 [Source:NCBI gene;Acc:396057]
35. MT-ND2 MT-ND2 387.83 3121.89
36. MDK ENSGALG00000008367 382.71 3080.67 midkine [Source:NCBI gene;Acc:423196]
37. RPS10 ENSGALG00000002813 373.75 3008.55 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
38. RPS4 RPS4 372.47 2998.24
39. RPS16 ENSGALG00000026490 350.71 2823.08 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
40. LDHB ENSGALG00000035836 348.15 2802.48 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
41. HMGN5 ENSGALG00000007131 343.03 2761.26 high mobility group nucleosome binding domain 5, transcript variant X1
42. MIF ENSGALG00000006326 335.35 2699.44 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
43. SNRPG ENSGALG00000028409 334.07 2689.14 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
44. ENSGALG00000018384 ENSGALG00000018384 328.95 2647.92
45. RPS27A ENSGALG00000036790 321.27 2586.10 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
46. RPL21 ENSGALG00000027035 318.71 2565.50 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
47. RPS20 ENSGALG00000014432 316.15 2544.89 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
48. RAN ENSGALG00000002569 311.03 2503.67 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
49. RPL31 ENSGALG00000016775 308.47 2483.07 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
50. RPL37 ENSGALG00000014833 299.51 2410.94 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
51. H2AFZ ENSGALG00000014023 298.23 2400.64 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
52. RPS11 ENSGALG00000017299 294.39 2369.73 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
53. FKBP4 ENSGALG00000014331 290.55 2338.82 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
54. RPL27 ENSGALG00000002837 286.71 2307.91 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
55. ATP6V0C ENSGALG00000009229 284.15 2287.30 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
56. RPS14 ENSGALG00000004588 281.59 2266.69 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
57. RPL36 ENSGALG00000000474 275.19 2215.18 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
58. RPSA 275.19 2215.18 ribosomal protein SA
59. RPS29 ENSGALG00000012229 273.91 2204.87 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
60. ENSGALG00000018386 ENSGALG00000018386 267.52 2153.44
61. RPL32 ENSGALG00000027142 263.68 2122.52 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
62. H3-IX H3-IX 261.12 2101.92
63. ERH ENSGALG00000017384 259.84 2091.61 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
64. RPL10A ENSGALG00000002644 256.00 2060.70 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
65. RPL38 ENSGALG00000001465 256.00 2060.70 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
66. SLC25A6_1 ENSGALG00000016691 249.60 2009.19 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
67. RPLP1 ENSGALG00000030878 248.32 1998.88 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
68. RPS12 ENSGALG00000013990 248.32 1998.88 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
69. EEF1B2 ENSGALG00000008590 244.48 1967.97 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
70. NDUFB9 ENSGALG00000042242 238.08 1916.45 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
71. ACTC1 ENSGALG00000009844 236.80 1906.15 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
72. ENSGALG00000028992 ENSGALG00000028992 235.52 1895.85
73. RPL14 ENSGALG00000043379 235.52 1895.85 ribosomal protein L14
74. RPL35A ENSGALG00000007611, ENSGALG00000041230 234.24 1885.54 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
75. RPL4 ENSGALG00000007711 230.40 1854.63 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
76. ATP5G3 226.56 1823.72 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
77. RPS15A ENSGALG00000006771 218.88 1761.90 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
78. KPNA2 ENSGALG00000003584 215.04 1730.99 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
79. CRHOA CRHOA 213.76 1720.69
80. HSPA8 ENSGALG00000006512 212.48 1710.38 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
81. RPL29 ENSGALG00000026978 211.20 1700.08 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
82. BTF3L4 ENSGALG00000010570 206.08 1658.87 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
83. TXN ENSGALG00000015704 204.80 1648.56 thioredoxin [Source:NCBI gene;Acc:396437]
84. RPS21 ENSGALG00000005338 203.52 1638.26 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
85. ANP32B ENSGALG00000037483 202.24 1627.96 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
86. RPL23A ENSGALG00000003966 202.24 1627.96 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
87. EIF1 ENSGALG00000028517 200.96 1617.65 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
88. RPL6 ENSGALG00000004818 199.68 1607.35 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
89. RPS15 ENSGALG00000015195 199.68 1607.35 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
90. RPS24 ENSGALG00000004871 198.40 1597.05 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
91. CDK1 ENSGALG00000003085 192.00 1545.53 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
92. HNRNPDL ENSGALG00000023199 190.72 1535.22 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
93. RPS3A ENSGALG00000010077 190.72 1535.22 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
94. EIF5A2 ENSGALG00000009309 188.16 1514.62 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
95. HMGB1 ENSGALG00000042875 181.76 1463.10 high mobility group box 1 [Source:NCBI gene;Acc:395724]
96. IGF2BP3 ENSGALG00000010961 181.76 1463.10 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
97. RPS8 ENSGALG00000010124 180.48 1452.80 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
98. SNRPE ENSGALG00000000137 180.48 1452.80 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
99. HSPE1 ENSGALG00000009070 177.92 1432.19 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
100. ENSGALG00000028649 ENSGALG00000028649 171.52 1380.67
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA