Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s13.

Sample reads: 124,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6416.65 51648.86
2. MT-ATP6 MT-ATP6 3882.46 31250.67
3. MT-ND5 MT-ND5 2863.48 23048.70
4. MT-CYB MT-CYB 2589.46 20843.06
5. gga-mir-3527 gga-mir-3527 2193.38 17654.94
6. EEF1A EEF1A 2139.27 17219.40
7. MT-CO1 MT-CO1 2136.96 17200.80
8. GAPDH ENSGALG00000014442 2019.52 16255.51 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. MT-ND4 MT-ND4 1856.03 14939.54
10. MT-ND3 MT-ND3 1508.31 12140.68
11. MT-ND1 MT-ND1 1222.77 9842.31
12. gga-mir-3533 ENSGALG00000027736 970.61 7812.63 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
13. PPIA ENSGALG00000028600 885.41 7126.84 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. RPS23 ENSGALG00000015617 786.39 6329.81 ribosomal protein S23
15. NME2 ENSGALG00000002932 749.55 6033.27 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. CRABP-I ENSGALG00000003193 681.62 5486.49 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
17. RPL5 ENSGALG00000005922 633.26 5097.23 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. RPL8 ENSGALG00000016232 614.84 4948.97 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. RPS6 ENSGALG00000015082 601.02 4837.73 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
20. ENSGALG00000002696 ENSGALG00000002696 564.18 4541.19
21. TMSB4X ENSGALG00000026383 558.42 4494.83 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
22. ENO1 ENSGALG00000002377 533.09 4290.94 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
23. RPS3 ENSGALG00000017330 493.94 3975.82 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
24. RPL23 ENSGALG00000001634 474.37 3818.30 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
25. RPL7 ENSGALG00000035252 472.07 3799.78 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
26. RPL7A ENSGALG00000003197 462.86 3725.65 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
27. STMN1 ENSGALG00000001475 462.86 3725.65 stathmin 1 [Source:NCBI gene;Acc:396057]
28. RPL27A ENSGALG00000005948 458.25 3688.54 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
29. RPS4 RPS4 453.64 3651.44
30. RPS7 ENSGALG00000016392 453.64 3651.44 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
31. EIF4G2 ENSGALG00000005587 431.77 3475.40 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
32. RPL26 RPL26 429.47 3456.89
33. RPL31 ENSGALG00000016775 424.86 3419.78 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
34. MT-ND2 MT-ND2 404.13 3252.92
35. RPL15 ENSGALG00000011290 399.53 3215.89 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
36. CIRBP ENSGALG00000030918 396.08 3188.12 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
37. RPS10 ENSGALG00000002813 392.62 3160.27 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
38. RPL18A 390.32 3141.76 ribosomal protein L18a
39. RPS11 ENSGALG00000017299 379.96 3058.37 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
40. LDHB ENSGALG00000035836 373.05 3002.75 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
41. RPL35A ENSGALG00000007611, ENSGALG00000041230 354.63 2854.49 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
42. NDUFB9 ENSGALG00000042242 323.54 2604.24 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
43. MDK ENSGALG00000008367 321.24 2585.72 midkine [Source:NCBI gene;Acc:423196]
44. SLC25A6_1 ENSGALG00000016691 321.24 2585.72 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
45. H2AFZ ENSGALG00000014023 310.87 2502.25 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
46. RAN ENSGALG00000002569 310.87 2502.25 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
47. ENSGALG00000018384 ENSGALG00000018384 307.42 2474.48
48. RPS16 ENSGALG00000026490 305.12 2455.97 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
49. RPL21 ENSGALG00000027035 299.36 2409.61 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
50. RPL37 ENSGALG00000014833 294.75 2372.50 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
51. RPL36 ENSGALG00000000474 289.00 2326.22 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
52. ATP6V0C ENSGALG00000009229 286.69 2307.62 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
53. RPL27 ENSGALG00000002837 286.69 2307.62 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
54. SNRPG ENSGALG00000028409 286.69 2307.62 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
55. HMGN5 ENSGALG00000007131 285.54 2298.37 high mobility group nucleosome binding domain 5, transcript variant X1
56. RPS15A ENSGALG00000006771 285.54 2298.37 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
57. RPS29 ENSGALG00000012229 283.24 2279.85 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
58. ENSGALG00000028992 ENSGALG00000028992 280.94 2261.34
59. RPL32 ENSGALG00000027142 280.94 2261.34 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
60. ENSGALG00000018386 ENSGALG00000018386 279.79 2252.08
61. RPS12 ENSGALG00000013990 278.63 2242.75 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
62. RPS27A ENSGALG00000036790 278.63 2242.75 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
63. H3-IX H3-IX 275.18 2214.98
64. RPS20 ENSGALG00000014432 272.88 2196.46 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
65. ATP5G3 270.57 2177.87 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
66. MIF ENSGALG00000006326 268.27 2159.36 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
67. RPL38 ENSGALG00000001465 264.82 2131.59 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
68. BTF3L4 ENSGALG00000010570 263.67 2122.33 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
69. KPNA2 ENSGALG00000003584 251.00 2020.35 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
70. ERH ENSGALG00000017384 241.79 1946.21 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
71. RPSA 237.18 1909.11 ribosomal protein SA
72. RPS3A ENSGALG00000010077 236.03 1899.85 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
73. CRHOA CRHOA 234.88 1890.59
74. FKBP4 ENSGALG00000014331 234.88 1890.59 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
75. RPS24 ENSGALG00000004871 234.88 1890.59 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
76. HNRNPDL ENSGALG00000023199 233.73 1881.34 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
77. RPL10A ENSGALG00000002644 227.97 1834.97 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
78. RPS14 ENSGALG00000004588 226.82 1825.72 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
79. RPLP1 ENSGALG00000030878 225.67 1816.46 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
80. TXN ENSGALG00000015704 222.22 1788.69 thioredoxin [Source:NCBI gene;Acc:396437]
81. RPL29 ENSGALG00000026978 219.91 1770.10 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
82. EEF1B2 ENSGALG00000008590 216.46 1742.33 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
83. RPS15 ENSGALG00000015195 214.16 1723.82 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
84. RPL14 ENSGALG00000043379 213.01 1714.56 ribosomal protein L14
85. ANP32B ENSGALG00000037483 211.85 1705.22 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
86. RPS8 ENSGALG00000010124 199.19 1603.32 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
87. CDK1 ENSGALG00000003085 196.89 1584.81 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
88. RPL6 ENSGALG00000004818 194.58 1566.21 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
89. HSPE1 ENSGALG00000009070 188.83 1519.93 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
90. TCEB3 ENSGALG00000034625 188.83 1519.93 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
91. RPS21 ENSGALG00000005338 187.68 1510.67 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
92. RPL23A ENSGALG00000003966 186.52 1501.34 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
93. ATP6V1G1 ENSGALG00000007190 184.22 1482.82 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
94. PRDX1 ENSGALG00000010243 184.22 1482.82 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
95. RPL13 ENSGALG00000006179 184.22 1482.82 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
96. EIF1 ENSGALG00000028517 183.07 1473.57 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
97. IGF2BP3 ENSGALG00000010961 181.92 1464.31 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
98. HSPA8 ENSGALG00000006512 180.77 1455.05 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
99. SNRPE ENSGALG00000000137 180.77 1455.05 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
100. COX7C ENSGALG00000027963 176.16 1417.95 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA