Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s8.

Sample reads: 124,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ND5 MT-ND5 4048.95 32590.54
2. MT-ATP6 MT-ATP6 3534.82 28452.24
3. ENSGALG00000018384 ENSGALG00000018384 3080.19 24792.86
4. MT-CO3 MT-CO3 2775.17 22337.72
5. EEF1A EEF1A 1842.80 14832.95
6. MT-CO1 MT-CO1 1667.18 13419.36
7. MT-ND4 MT-ND4 1661.41 13372.91
8. gga-mir-3533 ENSGALG00000027736 1628.48 13107.85 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. gga-mir-3527 gga-mir-3527 1565.51 12601.00
10. MT-ND1 MT-ND1 1519.30 12229.05
11. MT-CYB MT-CYB 1510.05 12154.60
12. NME2 ENSGALG00000002932 1139.76 9174.08 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
13. GAPDH ENSGALG00000014442 1074.48 8648.63 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. MT-ND2 MT-ND2 1045.60 8416.18
15. PPIA ENSGALG00000028600 856.70 6895.69 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. MT-ND3 MT-ND3 696.68 5607.67
17. ENSGALG00000018386 ENSGALG00000018386 633.14 5096.23
18. RPL5 ENSGALG00000005922 587.50 4728.87 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
19. RPL8 ENSGALG00000016232 529.15 4259.20 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. RPL26 RPL26 506.62 4077.85
21. RPS3 ENSGALG00000017330 498.54 4012.82 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
22. ENO1 ENSGALG00000002377 445.97 3589.67 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
23. TMSB4X ENSGALG00000026383 436.73 3515.30 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
24. RPL15 ENSGALG00000011290 432.10 3478.03 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
25. RPS7 ENSGALG00000016392 425.17 3422.25 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
26. CRABP-I ENSGALG00000003193 419.40 3375.81 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
27. CIRBP ENSGALG00000030918 418.82 3371.14 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
28. RPL27A ENSGALG00000005948 410.15 3301.35 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
29. RPL7 ENSGALG00000035252 401.49 3231.65 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
30. RPL7A ENSGALG00000003197 390.51 3143.27 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. MDK ENSGALG00000008367 384.16 3092.16 midkine [Source:NCBI gene;Acc:423196]
32. RPL23 ENSGALG00000001634 381.27 3068.89 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
33. STMN1 ENSGALG00000001475 367.98 2961.92 stathmin 1 [Source:NCBI gene;Acc:396057]
34. RPS27A ENSGALG00000036790 365.67 2943.33 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
35. EIF4G2 ENSGALG00000005587 357.58 2878.21 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
36. HMGN5 ENSGALG00000007131 352.96 2841.02 high mobility group nucleosome binding domain 5, transcript variant X1
37. RAN ENSGALG00000002569 351.81 2831.77 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
38. RPL21 ENSGALG00000027035 346.61 2789.91 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
39. ATP6V0C ENSGALG00000009229 344.87 2775.91 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
40. RPS20 ENSGALG00000014432 340.83 2743.39 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
41. RPS6 ENSGALG00000015082 330.43 2659.68 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
42. RPS23 ENSGALG00000015617 325.81 2622.49 ribosomal protein S23
43. RPS10 ENSGALG00000002813 315.99 2543.45 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
44. RPS4 RPS4 315.41 2538.78
45. EIF1 ENSGALG00000028517 298.08 2399.29 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
46. RPL31 ENSGALG00000016775 296.93 2390.03 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
47. LDHB ENSGALG00000035836 293.46 2362.10 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
48. RPL27 ENSGALG00000002837 290.00 2334.25 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
49. RPL4 ENSGALG00000007711 274.98 2213.35 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
50. SNRPG ENSGALG00000028409 272.09 2190.09 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
51. H3-IX H3-IX 269.78 2171.50
52. RPS16 ENSGALG00000026490 266.89 2148.23 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
53. RPS11 ENSGALG00000017299 265.15 2134.23 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
54. RPSA 263.42 2120.30 ribosomal protein SA
55. RPS24 ENSGALG00000004871 262.84 2115.63 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
56. H2AFZ ENSGALG00000014023 261.69 2106.38 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
57. RPL14 ENSGALG00000043379 255.33 2055.19 ribosomal protein L14
58. RPL32 ENSGALG00000027142 254.76 2050.60 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
59. RPL18A 250.71 2018.00 ribosomal protein L18a
60. SLC25A6_1 ENSGALG00000016691 248.98 2004.07 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
61. HNRNPDL ENSGALG00000023199 246.67 1985.48 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
62. RPLP1 ENSGALG00000030878 238.00 1915.69 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
63. TPT1 ENSGALG00000028872 237.43 1911.11 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
64. ATP5G3 234.54 1887.84 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
65. ENSGALG00000028992 ENSGALG00000028992 232.80 1873.84
66. RPL6 ENSGALG00000004818 224.72 1808.80 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
67. EEF1B2 ENSGALG00000008590 222.41 1790.21 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
68. RPL23A ENSGALG00000003966 221.83 1785.54 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
69. RPLP2 ENSGALG00000034811 221.83 1785.54 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
70. HMGN2 HMGN2 217.21 1748.35
71. RPS3A ENSGALG00000010077 216.63 1743.68 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
72. MIF ENSGALG00000006326 214.32 1725.09 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
73. RPS15A ENSGALG00000006771 209.70 1687.90 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
74. ANP32B ENSGALG00000037483 209.12 1683.24 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
75. RPL13 ENSGALG00000006179 206.23 1659.97 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
76. HMGB1 ENSGALG00000042875 205.08 1650.72 high mobility group box 1 [Source:NCBI gene;Acc:395724]
77. RPS29 ENSGALG00000012229 205.08 1650.72 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
78. RPL10A ENSGALG00000002644 203.92 1641.38 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
79. RPS14 ENSGALG00000004588 202.19 1627.45 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
80. RPS12 ENSGALG00000013990 201.61 1622.79 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
81. CALM CALM 199.88 1608.86
82. RPL35A ENSGALG00000007611, ENSGALG00000041230 198.14 1594.86 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
83. ENSGALG00000002696 ENSGALG00000002696 190.06 1529.82
84. RPL36 ENSGALG00000000474 187.17 1506.56 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
85. BTF3L4 ENSGALG00000010570 185.44 1492.63 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
86. NONO ENSGALG00000005507 185.44 1492.63 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
87. RPL38 ENSGALG00000001465 180.81 1455.36 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
88. FKBP4 ENSGALG00000014331 179.66 1446.11 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
89. NUCKS1 ENSGALG00000000708 179.66 1446.11 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
90. ERH ENSGALG00000017384 178.50 1436.77 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
91. HMGB2 ENSGALG00000010745 176.19 1418.18 high mobility group box 2 [Source:NCBI gene;Acc:396482]
92. RPL3 ENSGALG00000012172 176.19 1418.18 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
93. CRHOA CRHOA 175.04 1408.92
94. RPS15 ENSGALG00000015195 173.30 1394.92 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
95. RPL12 ENSGALG00000008806 172.73 1390.33 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
96. RPL9 ENSGALG00000000150 172.15 1385.66 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
97. HSPA8 ENSGALG00000006512 170.99 1376.32 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
98. ACTC1 ENSGALG00000009844 170.42 1371.73 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
99. CDK1 ENSGALG00000003085 169.26 1362.40 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
100. EIF5A2 ENSGALG00000009309 168.68 1357.73 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA