Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s7.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3277.97 26386.56
2. MT-ND5 MT-ND5 2639.71 21248.78
3. MT-ATP6 MT-ATP6 2545.84 20493.16
4. ENSGALG00000018384 ENSGALG00000018384 2239.71 18028.91
5. EEF1A EEF1A 2012.99 16203.89
6. MT-CO1 MT-CO1 1585.56 12763.23
7. gga-mir-3527 gga-mir-3527 1539.35 12391.25
8. MT-CYB MT-CYB 1448.37 11658.89
9. gga-mir-3533 ENSGALG00000027736 1249.10 10054.84 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. GAPDH ENSGALG00000014442 1225.99 9868.81 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. MT-ND1 MT-ND1 1158.12 9322.48
12. MT-ND4 MT-ND4 1085.92 8741.29
13. NME2 ENSGALG00000002932 1070.03 8613.38 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. PPIA ENSGALG00000028600 801.44 6451.32 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
15. RPL5 ENSGALG00000005922 772.56 6218.85 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. MT-ND3 MT-ND3 733.57 5904.99
17. ENO1 ENSGALG00000002377 597.83 4812.33 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
18. RPL8 ENSGALG00000016232 570.40 4591.53 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. TMSB4X ENSGALG00000026383 524.19 4219.55 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
20. RPL26 RPL26 496.75 3998.67
21. RPS3 ENSGALG00000017330 489.53 3940.55 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
22. RPL7 ENSGALG00000035252 488.09 3928.96 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
23. CRABP-I ENSGALG00000003193 454.87 3661.55 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
24. CIRBP ENSGALG00000030918 446.21 3591.84 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
25. RPL27A ENSGALG00000005948 424.55 3417.49 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. HMGN5 ENSGALG00000007131 421.66 3394.22 high mobility group nucleosome binding domain 5, transcript variant X1
27. STMN1 ENSGALG00000001475 410.11 3301.25 stathmin 1 [Source:NCBI gene;Acc:396057]
28. RPL7A ENSGALG00000003197 405.78 3266.39 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
29. RAN ENSGALG00000002569 400.00 3219.87 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
30. EIF4G2 ENSGALG00000005587 391.33 3150.08 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
31. RPS7 ENSGALG00000016392 391.33 3150.08 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
32. MT-ND2 MT-ND2 387.00 3115.22
33. RPL18A 379.78 3057.10 ribosomal protein L18a
34. RPL23 ENSGALG00000001634 379.78 3057.10 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
35. ENSGALG00000018386 ENSGALG00000018386 375.45 3022.25
36. RPS4 RPS4 374.01 3010.66
37. LDHB ENSGALG00000035836 372.56 2998.98 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
38. RPS10 ENSGALG00000002813 359.57 2894.42 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
39. RPS11 ENSGALG00000017299 359.57 2894.42 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
40. RPS16 ENSGALG00000026490 358.12 2882.75 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
41. RPL15 ENSGALG00000011290 356.68 2871.15 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
42. RPL21 ENSGALG00000027035 350.90 2824.63 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
43. RPL31 ENSGALG00000016775 349.46 2813.04 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
44. MDK ENSGALG00000008367 348.01 2801.36 midkine [Source:NCBI gene;Acc:423196]
45. RPS27A ENSGALG00000036790 346.57 2789.77 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
46. RPS6 ENSGALG00000015082 345.13 2778.18 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
47. RPL27 ENSGALG00000002837 335.02 2696.80 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
48. H3-IX H3-IX 330.69 2661.94
49. RPS23 ENSGALG00000015617 329.24 2650.27 ribosomal protein S23
50. RPS20 ENSGALG00000014432 323.47 2603.82 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
51. SLC25A6_1 ENSGALG00000016691 323.47 2603.82 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
52. RPL23A ENSGALG00000003966 322.02 2592.15 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
53. RPS24 ENSGALG00000004871 309.02 2487.51 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
54. RPL14 ENSGALG00000043379 306.14 2464.32 ribosomal protein L14
55. RPLP1 ENSGALG00000030878 306.14 2464.32 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
56. EEF1B2 ENSGALG00000008590 296.03 2382.94 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
57. MIF ENSGALG00000006326 284.48 2289.97 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
58. EIF1 ENSGALG00000028517 272.92 2196.91 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
59. H2AFZ ENSGALG00000014023 272.92 2196.91 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
60. RPL32 ENSGALG00000027142 270.04 2173.73 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
61. RPS3A ENSGALG00000010077 267.15 2150.47 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
62. ATP6V0C ENSGALG00000009229 264.26 2127.20 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
63. RPS15A ENSGALG00000006771 261.37 2103.94 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
64. RPS29 ENSGALG00000012229 261.37 2103.94 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
65. RPSA 261.37 2103.94 ribosomal protein SA
66. ATP5G3 258.48 2080.68 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
67. RPL35A ENSGALG00000007611, ENSGALG00000041230 258.48 2080.68 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
68. ENSGALG00000028992 ENSGALG00000028992 252.71 2034.23
69. ENSGALG00000002696 ENSGALG00000002696 245.49 1976.11
70. HNRNPDL ENSGALG00000023199 244.04 1964.44 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
71. SNRPG ENSGALG00000028409 225.27 1813.35 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
72. RPS14 ENSGALG00000004588 222.38 1790.08 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
73. HMGB2 ENSGALG00000010745 216.61 1743.64 high mobility group box 2 [Source:NCBI gene;Acc:396482]
74. HMGB1 ENSGALG00000042875 215.16 1731.97 high mobility group box 1 [Source:NCBI gene;Acc:395724]
75. RPL4 ENSGALG00000007711 215.16 1731.97 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
76. ANP32B ENSGALG00000037483 213.72 1720.37 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
77. RPL36 ENSGALG00000000474 212.27 1708.70 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
78. RPL6 ENSGALG00000004818 212.27 1708.70 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
79. RPL10A ENSGALG00000002644 210.83 1697.11 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
80. SNRPE ENSGALG00000000137 210.83 1697.11 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
81. BTF3L4 ENSGALG00000010570 209.39 1685.52 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
82. CALM CALM 205.05 1650.58
83. TPT1 ENSGALG00000028872 203.61 1638.99 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
84. CRHOA CRHOA 202.17 1627.40
85. RPLP2 ENSGALG00000034811 202.17 1627.40 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
86. FKBP4 ENSGALG00000014331 193.50 1557.61 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
87. HSPA8 ENSGALG00000006512 190.61 1534.35 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
88. RPL13 ENSGALG00000006179 189.17 1522.76 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
89. RPL12 ENSGALG00000008806 184.84 1487.90 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
90. RPS12 ENSGALG00000013990 184.84 1487.90 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
91. PRDX1 ENSGALG00000010243 183.39 1476.23 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
92. ERH ENSGALG00000017384 181.95 1464.64 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
93. EIF3F ENSGALG00000005326 179.06 1441.37 eukaryotic translation initiation factor 3 subunit F
94. HMGN2 HMGN2 177.62 1429.78
95. KPNA2 ENSGALG00000003584 177.62 1429.78 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
96. RPS8 ENSGALG00000010124 176.17 1418.11 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
97. PGK1 ENSGALG00000007936 174.73 1406.52 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
98. RPL38 ENSGALG00000001465 170.40 1371.66 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
99. RPS15 ENSGALG00000015195 170.40 1371.66 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
100. TCEB3 ENSGALG00000034625 170.40 1371.66 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA