Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s69.

Sample reads: 124,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3693.40 29728.19
2. MT-ATP6 MT-ATP6 2211.52 17800.54
3. MT-ND5 MT-ND5 2024.87 16298.19
4. gga-mir-3527 gga-mir-3527 1866.50 15023.47
5. EEF1A EEF1A 1753.38 14112.96
6. MT-CO1 MT-CO1 1753.38 14112.96
7. MT-CYB MT-CYB 1747.72 14067.41
8. GAPDH ENSGALG00000014442 1487.54 11973.22 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. MT-ND1 MT-ND1 1408.36 11335.90
10. MT-ND4 MT-ND4 1266.96 10197.77
11. gga-mir-3533 ENSGALG00000027736 1244.33 10015.62 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. MT-ND3 MT-ND3 1159.49 9332.74
13. ENSGALG00000018384 ENSGALG00000018384 927.59 7466.18
14. ENO1 ENSGALG00000002377 848.41 6828.86 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
15. NME2 ENSGALG00000002932 780.54 6282.57 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. RPL5 ENSGALG00000005922 723.98 5827.32 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. PPIA ENSGALG00000028600 667.41 5371.99 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
18. RPL8 ENSGALG00000016232 644.79 5189.92 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. MT-ND2 MT-ND2 627.82 5053.33
20. RPL7 ENSGALG00000035252 576.92 4643.63 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
21. RPS3 ENSGALG00000017330 526.01 4233.86 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
22. ENSGALG00000018386 ENSGALG00000018386 520.36 4188.38
23. RPL7A ENSGALG00000003197 463.80 3733.13 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
24. EEF1B2 ENSGALG00000008590 458.14 3687.57 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
25. MDK ENSGALG00000008367 446.83 3596.54 midkine [Source:NCBI gene;Acc:423196]
26. RPS10 ENSGALG00000002813 441.17 3550.98 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
27. TMSB4X ENSGALG00000026383 429.86 3459.95 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
28. RPS7 ENSGALG00000016392 424.20 3414.39 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
29. RPL23 ENSGALG00000001634 418.55 3368.91 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
30. RPS4 RPS4 412.89 3323.35
31. RPL27A ENSGALG00000005948 407.24 3277.88 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. RPL27 ENSGALG00000002837 401.58 3232.32 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
33. RPL18A 390.27 3141.29 ribosomal protein L18a
34. RPS11 ENSGALG00000017299 384.61 3095.73 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
35. RPS15A ENSGALG00000006771 367.64 2959.14 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
36. STMN1 ENSGALG00000001475 367.64 2959.14 stathmin 1 [Source:NCBI gene;Acc:396057]
37. CIRBP ENSGALG00000030918 361.99 2913.66 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
38. EIF4G2 ENSGALG00000005587 361.99 2913.66 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
39. RPL15 ENSGALG00000011290 356.33 2868.10 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
40. RPS6 ENSGALG00000015082 350.68 2822.63 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
41. SLC25A6_1 ENSGALG00000016691 345.02 2777.07 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
42. RAN ENSGALG00000002569 339.36 2731.51 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
43. RPS24 ENSGALG00000004871 339.36 2731.51 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
44. RPL23A ENSGALG00000003966 333.71 2686.03 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
45. RPL26 RPL26 316.74 2549.44
46. RPS20 ENSGALG00000014432 316.74 2549.44 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
47. RPL4 ENSGALG00000007711 311.08 2503.88 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
48. HMGN5 ENSGALG00000007131 299.77 2412.85 high mobility group nucleosome binding domain 5, transcript variant X1
49. RPL35A ENSGALG00000007611, ENSGALG00000041230 299.77 2412.85 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
50. RPL21 ENSGALG00000027035 294.11 2367.29 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
51. RPS27A ENSGALG00000036790 288.46 2321.82 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
52. RPSA 277.15 2230.78 ribosomal protein SA
53. LDHB ENSGALG00000035836 271.49 2185.22 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
54. RPL31 ENSGALG00000016775 271.49 2185.22 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
55. ATP6V0C ENSGALG00000009229 265.83 2139.67 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
56. ENSGALG00000002696 ENSGALG00000002696 265.83 2139.67
57. H3-IX H3-IX 265.83 2139.67
58. RPL6 ENSGALG00000004818 265.83 2139.67 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
59. RPS16 ENSGALG00000026490 265.83 2139.67 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
60. TCEB3 ENSGALG00000034625 265.83 2139.67 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
61. ATP5G3 260.18 2094.19 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
62. RPL14 ENSGALG00000043379 248.87 2003.16 ribosomal protein L14
63. RPS3A ENSGALG00000010077 248.87 2003.16 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
64. RPS14 ENSGALG00000004588 243.21 1957.60 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
65. RPS23 ENSGALG00000015617 243.21 1957.60 ribosomal protein S23
66. RPL32 ENSGALG00000027142 237.55 1912.04 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
67. RPL36 ENSGALG00000000474 231.90 1866.56 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
68. SNRPG ENSGALG00000028409 231.90 1866.56 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
69. TPT1 ENSGALG00000028872 231.90 1866.56 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
70. TTR ENSGALG00000015143 231.90 1866.56 transthyretin [Source:NCBI gene;Acc:396277]
71. BTF3L4 ENSGALG00000010570 226.24 1821.01 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
72. KPNA2 ENSGALG00000003584 226.24 1821.01 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
73. RPL10A ENSGALG00000002644 226.24 1821.01 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
74. RPL13 ENSGALG00000006179 226.24 1821.01 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
75. RPLP1 ENSGALG00000030878 226.24 1821.01 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
76. PRDX1 ENSGALG00000010243 220.59 1775.53 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
77. RPLP2 ENSGALG00000034811 214.93 1729.97 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
78. RPS15 ENSGALG00000015195 214.93 1729.97 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
79. RPS21 ENSGALG00000005338 214.93 1729.97 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
80. ENSGALG00000028992 ENSGALG00000028992 209.27 1684.42
81. RPL19 ENSGALG00000001658 209.27 1684.42 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
82. EIF5A2 ENSGALG00000009309 203.62 1638.94 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
83. RPL38 ENSGALG00000001465 203.62 1638.94 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
84. DDX3X ENSGALG00000016231 197.96 1593.38 DEAD-box helicase 3 X-linked [Source:NCBI gene;Acc:418567]
85. HSPA8 ENSGALG00000006512 197.96 1593.38 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
86. MDH1 ENSGALG00000008858 197.96 1593.38 malate dehydrogenase 1 [Source:NCBI gene;Acc:421281]
87. SIKE1 ENSGALG00000002147 197.96 1593.38 suppressor of IKBKE 1 [Source:NCBI gene;Acc:419887]
88. RPS12 ENSGALG00000013990 192.31 1547.90 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
89. IGF2BP3 ENSGALG00000010961 186.65 1502.35 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
90. ANP32B ENSGALG00000037483 180.99 1456.79 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
91. CRHOA CRHOA 180.99 1456.79
92. EIF4A2 ENSGALG00000008684 180.99 1456.79 eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
93. HSPE1 ENSGALG00000009070 180.99 1456.79 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
94. MIF ENSGALG00000006326 180.99 1456.79 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
95. RPS29 ENSGALG00000012229 180.99 1456.79 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
96. gga-mir-3526 ENSGALG00000029121 180.99 1456.79 gga-mir-3526 [Source:miRBase;Acc:MI0015377]
97. EEF1D 175.34 1411.31 eukaryotic translation elongation factor 1 delta, transcript variant X13
98. EIF3F ENSGALG00000005326 175.34 1411.31 eukaryotic translation initiation factor 3 subunit F
99. NONO ENSGALG00000005507 175.34 1411.31 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
100. RPL29 ENSGALG00000026978 169.68 1365.76 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA