Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s67.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 3566.70 28713.14
2. MT-CO3 MT-CO3 3498.11 28160.96
3. MT-ND5 MT-ND5 2943.42 23695.52
4. MT-ND1 MT-ND1 2093.50 16853.38
5. MT-CO1 MT-CO1 2087.53 16805.32
6. EEF1A EEF1A 1863.87 15004.78
7. gga-mir-3527 gga-mir-3527 1798.26 14476.60
8. MT-ND4 MT-ND4 1634.24 13156.18
9. gga-mir-3533 ENSGALG00000027736 1589.51 12796.09 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. MT-CYB MT-CYB 1565.65 12604.01
11. GAPDH ENSGALG00000014442 1303.22 10491.36 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. NME2 ENSGALG00000002932 1079.55 8690.74 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
13. MT-ND3 MT-ND3 1037.80 8354.64
14. PPIA ENSGALG00000028600 1034.82 8330.65 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
15. ENO1 ENSGALG00000002377 662.05 5329.73 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
16. ENSGALG00000018384 ENSGALG00000018384 641.17 5161.63
17. RPL23 ENSGALG00000001634 578.54 4657.44 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
18. RPL5 ENSGALG00000005922 575.56 4633.45 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
19. RPL26 RPL26 501.01 4033.30
20. MDK ENSGALG00000008367 498.03 4009.31 midkine [Source:NCBI gene;Acc:423196]
21. RPS3 ENSGALG00000017330 498.03 4009.31 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
22. MT-ND2 MT-ND2 468.20 3769.17
23. RPL7A ENSGALG00000003197 468.20 3769.17 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
24. RPS4 RPS4 453.29 3649.14
25. RPL7 ENSGALG00000035252 450.31 3625.15 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
26. RPL8 ENSGALG00000016232 426.45 3433.07 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
27. ATP6V0C ENSGALG00000009229 399.61 3217.00 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
28. CIRBP ENSGALG00000030918 372.77 3000.92 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
29. RPS10 ENSGALG00000002813 369.79 2976.93 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
30. TMSB4X ENSGALG00000026383 366.81 2952.94 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
31. RPS27A ENSGALG00000036790 354.88 2856.90 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
32. SLC25A6_1 ENSGALG00000016691 354.88 2856.90 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
33. RPS16 ENSGALG00000026490 345.93 2784.85 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
34. H3-IX H3-IX 342.95 2760.86
35. RPS11 ENSGALG00000017299 339.97 2736.87 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
36. RPL15 ENSGALG00000011290 336.99 2712.88 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
37. EEF1B2 ENSGALG00000008590 331.02 2664.82 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
38. RPS20 ENSGALG00000014432 328.04 2640.83 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
39. ENSGALG00000018386 ENSGALG00000018386 322.08 2592.85
40. RPS6 ENSGALG00000015082 319.09 2568.78 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
41. RPL27 ENSGALG00000002837 316.11 2544.79 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
42. RAN ENSGALG00000002569 313.13 2520.80 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
43. RPSA 313.13 2520.80 ribosomal protein SA
44. RPL14 ENSGALG00000043379 310.15 2496.81 ribosomal protein L14
45. RPL31 ENSGALG00000016775 310.15 2496.81 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
46. RPS23 ENSGALG00000015617 310.15 2496.81 ribosomal protein S23
47. RPS24 ENSGALG00000004871 310.15 2496.81 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
48. STMN1 ENSGALG00000001475 310.15 2496.81 stathmin 1 [Source:NCBI gene;Acc:396057]
49. RPS7 ENSGALG00000016392 301.20 2424.76 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
50. HMGN5 ENSGALG00000007131 295.24 2376.78 high mobility group nucleosome binding domain 5, transcript variant X1
51. RPL18A 295.24 2376.78 ribosomal protein L18a
52. ATP5G3 292.25 2352.71 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
53. EIF4G2 ENSGALG00000005587 292.25 2352.71 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
54. FKBP4 ENSGALG00000014331 289.27 2328.72 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
55. RPS29 ENSGALG00000012229 289.27 2328.72 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
56. EIF1 ENSGALG00000028517 283.31 2280.74 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
57. RPL21 ENSGALG00000027035 283.31 2280.74 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
58. RPL23A ENSGALG00000003966 280.33 2256.75 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
59. RPL27A ENSGALG00000005948 280.33 2256.75 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
60. ENSGALG00000028992 ENSGALG00000028992 274.36 2208.69
61. RPS15A ENSGALG00000006771 259.45 2088.66 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
62. TPT1 ENSGALG00000028872 247.52 1992.62 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
63. HNRNPDL ENSGALG00000023199 244.54 1968.63 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
64. RPL32 ENSGALG00000027142 241.56 1944.64 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
65. LDHB ENSGALG00000035836 238.58 1920.65 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
66. RPL6 ENSGALG00000004818 238.58 1920.65 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
67. RPL35A ENSGALG00000007611, ENSGALG00000041230 235.59 1896.58 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
68. RPS14 ENSGALG00000004588 232.61 1872.59 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
69. MEIS2 ENSGALG00000039118 226.65 1824.61 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
70. RPL4 ENSGALG00000007711 223.66 1800.54 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
71. NONO ENSGALG00000005507 220.68 1776.55 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
72. RPL13 ENSGALG00000006179 220.68 1776.55 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
73. RPS3A ENSGALG00000010077 217.70 1752.56 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
74. BTF3L4 ENSGALG00000010570 214.72 1728.57 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
75. CRHOA CRHOA 208.75 1680.51
76. RPLP1 ENSGALG00000030878 205.77 1656.52 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
77. SNRPG ENSGALG00000028409 205.77 1656.52 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
78. RPL36 ENSGALG00000000474 196.82 1584.47 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
79. SNRPE ENSGALG00000000137 196.82 1584.47 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
80. EIF3F ENSGALG00000005326 193.84 1560.48 eukaryotic translation initiation factor 3 subunit F
81. KPNA2 ENSGALG00000003584 193.84 1560.48 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
82. ERH ENSGALG00000017384 190.86 1536.49 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
83. HSPA8 ENSGALG00000006512 190.86 1536.49 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
84. HMGN2 HMGN2 187.88 1512.50
85. ANP32B ENSGALG00000037483 184.90 1488.51 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
86. RPL10A ENSGALG00000002644 184.90 1488.51 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
87. gga-mir-3526 ENSGALG00000029121 184.90 1488.51 gga-mir-3526 [Source:miRBase;Acc:MI0015377]
88. RPL9 ENSGALG00000000150 178.93 1440.45 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
89. RPS8 ENSGALG00000010124 178.93 1440.45 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
90. CNN3 ENSGALG00000005597 175.95 1416.46 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
91. RPL19 ENSGALG00000001658 175.95 1416.46 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
92. RPLP0 ENSGALG00000023294 175.95 1416.46 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
93. RPS12 ENSGALG00000013990 175.95 1416.46 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
94. ENSGALG00000002696 ENSGALG00000002696 172.97 1392.47
95. RPL38 ENSGALG00000001465 172.97 1392.47 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
96. RPS15 ENSGALG00000015195 172.97 1392.47 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
97. DDX5 ENSGALG00000003532 169.98 1368.40 DEAD-box helicase 5 [Source:NCBI gene;Acc:395629]
98. TCEB3 ENSGALG00000034625 169.98 1368.40 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
99. RPL3 ENSGALG00000012172 167.00 1344.41 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
100. GNB2L1 ENSGALG00000000122 158.06 1272.44 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA