Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s64.

Sample reads: 124,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4300.17 34614.18
2. MT-ND5 MT-ND5 3325.12 26765.53
3. EEF1A EEF1A 2274.68 18310.02
4. MT-ATP6 MT-ATP6 2109.83 16983.06
5. MT-ND1 MT-ND1 2101.52 16916.17
6. MT-CO1 MT-CO1 1982.04 15954.41
7. MT-CYB MT-CYB 1719.43 13840.54
8. gga-mir-3533 ENSGALG00000027736 1571.83 12652.43 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. gga-mir-3527 gga-mir-3527 1539.88 12395.25
10. MT-ND4 MT-ND4 1408.26 11335.78
11. GAPDH ENSGALG00000014442 1289.41 10379.09 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. NME2 ENSGALG00000002932 968.02 7792.07 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
13. MT-ND3 MT-ND3 873.45 7030.83
14. PPIA ENSGALG00000028600 747.58 6017.64 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
15. ENSGALG00000018384 ENSGALG00000018384 739.27 5950.75
16. RPL5 ENSGALG00000005922 707.32 5693.57 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. RPL26 RPL26 580.81 4675.23
18. RPL8 ENSGALG00000016232 559.72 4505.46 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. RPS3 ENSGALG00000017330 525.86 4232.91 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
20. MDK ENSGALG00000008367 508.61 4094.05 midkine [Source:NCBI gene;Acc:423196]
21. TMSB4X ENSGALG00000026383 497.11 4001.48 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
22. CIRBP ENSGALG00000030918 479.86 3862.63 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
23. ENO1 ENSGALG00000002377 479.22 3857.48 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
24. RPS7 ENSGALG00000016392 447.91 3605.45 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
25. RPL15 ENSGALG00000011290 437.68 3523.10 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
26. RPS6 ENSGALG00000015082 433.85 3492.27 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
27. RPL7A ENSGALG00000003197 430.02 3461.44 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
28. STMN1 ENSGALG00000001475 427.46 3440.84 stathmin 1 [Source:NCBI gene;Acc:396057]
29. EIF4G2 ENSGALG00000005587 411.49 3312.29 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
30. RPL7 ENSGALG00000035252 403.18 3245.39 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
31. RPL27A ENSGALG00000005948 393.60 3168.28 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. RPS10 ENSGALG00000002813 387.85 3122.00 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
33. MT-ND2 MT-ND2 384.01 3091.09
34. ATP6V0C ENSGALG00000009229 378.90 3049.95 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
35. RPS27A ENSGALG00000036790 377.62 3039.65 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
36. H3-IX H3-IX 369.32 2972.84
37. RPS4 RPS4 363.57 2926.55
38. RPL21 ENSGALG00000027035 359.09 2890.49 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
39. RPL23 ENSGALG00000001634 359.09 2890.49 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
40. RPL31 ENSGALG00000016775 350.15 2818.53 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
41. EEF1B2 ENSGALG00000008590 347.59 2797.92 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
42. RPS20 ENSGALG00000014432 341.84 2751.64 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
43. ENSGALG00000018386 ENSGALG00000018386 339.28 2731.03
44. RPS24 ENSGALG00000004871 330.98 2664.22 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
45. RAN ENSGALG00000002569 316.92 2551.04 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
46. RPS16 ENSGALG00000026490 316.28 2545.89 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
47. RPS23 ENSGALG00000015617 312.45 2515.06 ribosomal protein S23
48. RPSA 302.23 2432.80 ribosomal protein SA
49. HMGN5 ENSGALG00000007131 291.36 2345.30 high mobility group nucleosome binding domain 5, transcript variant X1
50. RPS11 ENSGALG00000017299 291.36 2345.30 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
51. RPL27 ENSGALG00000002837 290.09 2335.08 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
52. SLC25A6_1 ENSGALG00000016691 282.42 2273.34 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
53. RPS15A ENSGALG00000006771 278.58 2242.43 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
54. RPL4 ENSGALG00000007711 272.19 2190.99 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
55. RPL14 ENSGALG00000043379 262.61 2113.88 ribosomal protein L14
56. RPL32 ENSGALG00000027142 257.50 2072.74 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
57. CRHOA CRHOA 254.94 2052.14
58. ENSGALG00000028992 ENSGALG00000028992 246.00 1980.17
59. TPT1 ENSGALG00000028872 239.61 1928.74 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
60. RPL18A 231.30 1861.85 ribosomal protein L18a
61. RPL23A ENSGALG00000003966 230.02 1851.54 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
62. MEIS2 ENSGALG00000039118 226.19 1820.71 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
63. EIF1 ENSGALG00000028517 224.91 1810.41 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
64. RPL13 ENSGALG00000006179 223.63 1800.11 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
65. RPS3A ENSGALG00000010077 223.63 1800.11 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
66. CALM CALM 222.36 1789.88
67. RPS12 ENSGALG00000013990 222.36 1789.88 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
68. SNRPG ENSGALG00000028409 219.16 1764.13 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
69. ENSGALG00000002696 ENSGALG00000002696 217.24 1748.67
70. HNRNPDL ENSGALG00000023199 215.33 1733.30 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
71. ANP32B ENSGALG00000037483 211.49 1702.39 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
72. ATP5G3 210.22 1692.16 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
73. FKBP4 ENSGALG00000014331 209.58 1687.01 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
74. RPL10A ENSGALG00000002644 208.30 1676.71 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
75. RPLP1 ENSGALG00000030878 206.38 1661.25 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
76. RPL3 ENSGALG00000012172 205.74 1656.10 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
77. RPS14 ENSGALG00000004588 205.74 1656.10 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
78. RPS29 ENSGALG00000012229 204.47 1645.88 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
79. NONO ENSGALG00000005507 202.55 1630.42 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
80. CNN3 ENSGALG00000005597 191.69 1543.01 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
81. RPL12 ENSGALG00000008806 191.05 1537.86 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
82. H2AFZ ENSGALG00000014023 187.21 1506.95 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
83. KPNA2 ENSGALG00000003584 185.30 1491.57 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
84. RPL6 ENSGALG00000004818 184.02 1481.27 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
85. RPL35A ENSGALG00000007611, ENSGALG00000041230 183.38 1476.12 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
86. RPS8 ENSGALG00000010124 183.38 1476.12 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
87. SNRPE ENSGALG00000000137 182.74 1470.96 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
88. EIF3F ENSGALG00000005326 182.10 1465.81 eukaryotic translation initiation factor 3 subunit F
89. HMGN2 HMGN2 182.10 1465.81
90. RPL9 ENSGALG00000000150 181.46 1460.66 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
91. RPL36 ENSGALG00000000474 175.07 1409.22 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
92. LDHB ENSGALG00000035836 173.16 1393.85 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
93. RPL38 ENSGALG00000001465 173.16 1393.85 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
94. CDK1 ENSGALG00000003085 168.05 1352.72 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
95. EEF1D 168.05 1352.72 eukaryotic translation elongation factor 1 delta, transcript variant X13
96. COL1A2 ENSGALG00000009641 164.21 1321.81 collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]
97. IGF2BP3 ENSGALG00000010961 164.21 1321.81 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
98. RPS15 ENSGALG00000015195 161.02 1296.13 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
99. HMGB1 ENSGALG00000042875 160.38 1290.98 high mobility group box 1 [Source:NCBI gene;Acc:395724]
100. gga-mir-3526 ENSGALG00000029121 160.38 1290.98 gga-mir-3526 [Source:miRBase;Acc:MI0015377]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA