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Experiment Chicken_E3_anterior_slice_2, section s60.

Sample reads: 124,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3966.28 31926.15
2. MT-ND5 MT-ND5 3737.65 30085.82
3. MT-ATP6 MT-ATP6 2453.71 19750.88
4. MT-CO1 MT-CO1 2339.81 18834.05
5. EEF1A EEF1A 2102.86 16926.75
6. MT-ND1 MT-ND1 1990.62 16023.29
7. MT-CYB MT-CYB 1768.92 14238.74
8. gga-mir-3533 ENSGALG00000027736 1666.66 13415.60 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. GAPDH ENSGALG00000014442 1598.21 12864.62 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. MT-ND4 MT-ND4 1430.27 11512.81
11. gga-mir-3527 gga-mir-3527 1384.82 11146.96
12. NME2 ENSGALG00000002932 1070.00 8612.85 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
13. MT-ND3 MT-ND3 821.14 6609.68
14. PPIA ENSGALG00000028600 793.70 6388.80 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
15. ENSGALG00000018384 ENSGALG00000018384 702.52 5654.86
16. RPL5 ENSGALG00000005922 693.10 5579.04 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. MDK ENSGALG00000008367 599.99 4829.56 midkine [Source:NCBI gene;Acc:423196]
18. RPL8 ENSGALG00000016232 587.52 4729.18 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. RPL26 RPL26 570.33 4590.81
20. ENO1 ENSGALG00000002377 556.20 4477.07 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
21. RPS3 ENSGALG00000017330 539.29 4340.96 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
22. RPS7 ENSGALG00000016392 464.47 3738.70 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
23. RPL7 ENSGALG00000035252 456.43 3673.99 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
24. STMN1 ENSGALG00000001475 444.52 3578.12 stathmin 1 [Source:NCBI gene;Acc:396057]
25. CIRBP ENSGALG00000030918 439.81 3540.20 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
26. RPS20 ENSGALG00000014432 420.13 3381.79 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
27. RPL7A ENSGALG00000003197 417.08 3357.24 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
28. RPL15 ENSGALG00000011290 412.65 3321.58 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
29. RPL27A ENSGALG00000005948 402.67 3241.25 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. RPS10 ENSGALG00000002813 399.62 3216.70 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
31. RPS6 ENSGALG00000015082 387.15 3116.32 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
32. RPL21 ENSGALG00000027035 386.87 3114.07 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
33. EIF4G2 ENSGALG00000005587 379.11 3051.61 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
34. MT-ND2 MT-ND2 378.28 3044.93
35. ENSGALG00000018386 ENSGALG00000018386 377.17 3035.99
36. TMSB4X ENSGALG00000026383 364.98 2937.87 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
37. RPS27A ENSGALG00000036790 364.43 2933.44 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
38. RPL23 ENSGALG00000001634 356.39 2868.72 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
39. H3-IX H3-IX 350.57 2821.88
40. RPS4 RPS4 348.08 2801.83
41. EEF1B2 ENSGALG00000008590 344.75 2775.03 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
42. RPS24 ENSGALG00000004871 333.66 2685.76 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
43. HMGN5 ENSGALG00000007131 320.64 2580.96 high mobility group nucleosome binding domain 5, transcript variant X1
44. ATP6V0C ENSGALG00000009229 317.31 2554.15 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
45. RPL4 ENSGALG00000007711 317.04 2551.98 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
46. RAN ENSGALG00000002569 314.54 2531.86 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
47. RPL31 ENSGALG00000016775 311.77 2509.56 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
48. RPSA 308.72 2485.01 ribosomal protein SA
49. RPL27 ENSGALG00000002837 300.69 2420.37 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
50. RPS11 ENSGALG00000017299 292.09 2351.15 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
51. RPS23 ENSGALG00000015617 277.13 2230.73 ribosomal protein S23
52. SLC25A6_1 ENSGALG00000016691 267.43 2152.65 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
53. RPS16 ENSGALG00000026490 256.90 2067.89 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
54. RPL14 ENSGALG00000043379 252.47 2032.23 ribosomal protein L14
55. ENSGALG00000028992 ENSGALG00000028992 251.36 2023.30
56. TPT1 ENSGALG00000028872 248.86 2003.17 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
57. RPL23A ENSGALG00000003966 245.54 1976.45 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
58. RPS15A ENSGALG00000006771 244.71 1969.77 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
59. CRHOA CRHOA 244.15 1965.26
60. MEIS2 ENSGALG00000039118 244.15 1965.26 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
61. RPL18A 243.04 1956.32 ribosomal protein L18a
62. RPL3 ENSGALG00000012172 242.49 1951.90 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
63. RPS3A ENSGALG00000010077 239.44 1927.35 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
64. NONO ENSGALG00000005507 237.50 1911.73 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
65. SNRPG ENSGALG00000028409 235.28 1893.86 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
66. ANP32B ENSGALG00000037483 233.90 1882.75 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
67. RPL32 ENSGALG00000027142 229.74 1849.27 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
68. EIF1 ENSGALG00000028517 225.31 1813.61 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
69. RPS12 ENSGALG00000013990 223.09 1795.74 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
70. ATP5G3 218.10 1755.57 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
71. RPLP1 ENSGALG00000030878 212.28 1708.73 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
72. HMGN2 HMGN2 208.96 1682.00
73. FKBP4 ENSGALG00000014331 205.63 1655.20 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
74. RPS29 ENSGALG00000012229 205.08 1650.77 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
75. RPL6 ENSGALG00000004818 204.24 1644.01 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
76. RPL10A ENSGALG00000002644 203.97 1641.84 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
77. MIF ENSGALG00000006326 202.86 1632.90 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
78. EIF3F ENSGALG00000005326 200.09 1610.60 eukaryotic translation initiation factor 3 subunit F
79. RPL35A ENSGALG00000007611, ENSGALG00000041230 198.70 1599.41 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
80. ENSGALG00000002696 ENSGALG00000002696 195.65 1574.86
81. RPL13 ENSGALG00000006179 194.82 1568.18 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
82. CALM CALM 193.99 1561.50
83. IGF2BP3 ENSGALG00000010961 193.16 1554.82 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
84. HNRNPDL ENSGALG00000023199 192.33 1548.14 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
85. H2AFZ ENSGALG00000014023 186.23 1499.04 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
86. RPS14 ENSGALG00000004588 186.23 1499.04 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
87. CNN3 ENSGALG00000005597 185.40 1492.36 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
88. LDHB ENSGALG00000035836 185.40 1492.36 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
89. RPLP2 ENSGALG00000034811 184.85 1487.93 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
90. CDK1 ENSGALG00000003085 184.29 1483.42 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
91. RPL38 ENSGALG00000001465 180.69 1454.45 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
92. KPNA2 ENSGALG00000003584 180.13 1449.94 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
93. RPL12 ENSGALG00000008806 179.86 1447.76 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
94. EEF1D 177.64 1429.89 eukaryotic translation elongation factor 1 delta, transcript variant X13
95. PGK1 ENSGALG00000007936 175.42 1412.02 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
96. SNRPE ENSGALG00000000137 174.04 1400.92 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
97. RPS8 ENSGALG00000010124 172.93 1391.98 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
98. RPL36 ENSGALG00000000474 171.82 1383.05 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
99. RPL9 ENSGALG00000000150 168.22 1354.07 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
100. EIF4EBP1 ENSGALG00000003205 166.56 1340.71 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA