Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s6.

Sample reads: 124,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ND5 MT-ND5 3707.41 29841.22
2. MT-ATP6 MT-ATP6 3584.38 28850.95
3. MT-CO3 MT-CO3 3527.60 28393.92
4. gga-mir-3527 gga-mir-3527 2098.58 16891.63
5. MT-CO1 MT-CO1 1909.31 15368.18
6. MT-ND4 MT-ND4 1699.92 13682.78
7. EEF1A EEF1A 1680.99 13530.42
8. MT-ND1 MT-ND1 1670.35 13444.77
9. ENSGALG00000018384 ENSGALG00000018384 1552.05 12492.57
10. MT-CYB MT-CYB 1477.52 11892.67
11. gga-mir-3533 ENSGALG00000027736 1179.42 9493.24 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. GAPDH ENSGALG00000014442 1169.95 9417.02 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. NME2 ENSGALG00000002932 1093.06 8798.12 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. MT-ND3 MT-ND3 837.54 6741.42
15. PPIA ENSGALG00000028600 805.60 6484.34 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. RPL5 ENSGALG00000005922 667.19 5370.26 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. TMSB4X ENSGALG00000026383 592.67 4770.45 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
18. RPL8 ENSGALG00000016232 573.74 4618.08 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. RPL26 RPL26 559.54 4503.78
20. ENO1 ENSGALG00000002377 525.24 4227.70 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
21. MT-ND2 MT-ND2 515.77 4151.47
22. RPS3 ENSGALG00000017330 490.93 3951.53 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
23. RPL27A ENSGALG00000005948 460.17 3703.94 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
24. RPL15 ENSGALG00000011290 436.51 3513.50 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
25. RPS7 ENSGALG00000016392 416.40 3351.64 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
26. EIF4G2 ENSGALG00000005587 414.04 3332.64 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
27. RAN ENSGALG00000002569 410.49 3304.07 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
28. HMGN5 ENSGALG00000007131 403.39 3246.92 high mobility group nucleosome binding domain 5, transcript variant X1
29. RPL7 ENSGALG00000035252 388.01 3123.12 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
30. RPS20 ENSGALG00000014432 388.01 3123.12 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
31. CRABP-I ENSGALG00000003193 385.65 3104.13 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
32. RPS6 ENSGALG00000015082 382.10 3075.55 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
33. RPL23 ENSGALG00000001634 379.73 3056.48 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
34. STMN1 ENSGALG00000001475 376.18 3027.90 stathmin 1 [Source:NCBI gene;Acc:396057]
35. CIRBP ENSGALG00000030918 369.09 2970.83 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
36. RPS23 ENSGALG00000015617 366.72 2951.76 ribosomal protein S23
37. RPS27A ENSGALG00000036790 360.80 2904.11 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
38. RPS10 ENSGALG00000002813 356.07 2866.03 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
39. RPL21 ENSGALG00000027035 326.50 2628.02 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
40. RPL27 ENSGALG00000002837 324.13 2608.95 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
41. RPL7A ENSGALG00000003197 322.95 2599.45 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
42. RPS24 ENSGALG00000004871 319.40 2570.87 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
43. ENSGALG00000018386 ENSGALG00000018386 313.49 2523.30
44. LDHB ENSGALG00000035836 308.75 2485.15 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
45. RPL23A ENSGALG00000003966 302.84 2437.58 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
46. ENSGALG00000028992 ENSGALG00000028992 295.74 2380.43
47. RPL31 ENSGALG00000016775 292.19 2351.86 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
48. SNRPG ENSGALG00000028409 292.19 2351.86 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
49. RPL14 ENSGALG00000043379 291.01 2342.36 ribosomal protein L14
50. ATP6V0C ENSGALG00000009229 288.64 2323.29 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
51. RPL4 ENSGALG00000007711 283.91 2285.21 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
52. RPL32 ENSGALG00000027142 279.18 2247.14 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
53. RPSA 272.08 2189.99 ribosomal protein SA
54. RPS11 ENSGALG00000017299 270.90 2180.49 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
55. RPS4 RPS4 269.72 2171.00
56. MDK ENSGALG00000008367 264.98 2132.84 midkine [Source:NCBI gene;Acc:423196]
57. RPS15A ENSGALG00000006771 261.44 2104.35 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
58. H2AFZ ENSGALG00000014023 260.25 2094.77 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
59. SLC25A6_1 ENSGALG00000016691 259.07 2085.27 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
60. RPLP1 ENSGALG00000030878 257.89 2075.78 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
61. RPS16 ENSGALG00000026490 254.34 2047.20 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
62. RPS3A ENSGALG00000010077 253.15 2037.62 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
63. EIF1 ENSGALG00000028517 248.42 1999.55 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
64. RPL6 ENSGALG00000004818 248.42 1999.55 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
65. MIF ENSGALG00000006326 247.24 1990.05 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
66. H3-IX H3-IX 244.87 1970.98
67. RPS29 ENSGALG00000012229 238.96 1923.41 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
68. RPS12 ENSGALG00000013990 237.78 1913.91 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
69. HNRNPDL ENSGALG00000023199 236.59 1904.33 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
70. EEF1B2 ENSGALG00000008590 235.41 1894.83 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
71. ATP5G3 228.31 1837.68 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
72. RPL18A 224.76 1809.11 ribosomal protein L18a
73. PRDX1 ENSGALG00000010243 223.58 1799.61 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
74. RPL35A ENSGALG00000007611, ENSGALG00000041230 222.40 1790.11 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
75. RPL3 ENSGALG00000012172 220.03 1771.04 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
76. RPL36 ENSGALG00000000474 220.03 1771.04 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
77. ENSGALG00000002696 ENSGALG00000002696 216.48 1742.46
78. HMGN2 HMGN2 211.75 1704.39
79. RPL38 ENSGALG00000001465 205.84 1656.82 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
80. RPL12 ENSGALG00000008806 203.47 1637.75 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
81. RPL13 ENSGALG00000006179 202.29 1628.25 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
82. CALM CALM 197.56 1590.18
83. NUCKS1 ENSGALG00000000708 195.19 1571.10 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
84. CRHOA CRHOA 194.01 1561.60
85. HSPE1 ENSGALG00000009070 194.01 1561.60 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
86. FKBP4 ENSGALG00000014331 192.82 1552.02 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
87. RPL10A ENSGALG00000002644 192.82 1552.02 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
88. HSP90AB1 ENSGALG00000010175 190.46 1533.03 heat shock protein 90 alpha family class B member 1 [Source:NCBI gene;Acc:396188]
89. HMGB1 ENSGALG00000042875 189.27 1523.45 high mobility group box 1 [Source:NCBI gene;Acc:395724]
90. ANP32B ENSGALG00000037483 184.54 1485.38 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
91. EIF5A2 ENSGALG00000009309 179.81 1447.30 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
92. ERH ENSGALG00000017384 179.81 1447.30 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
93. TPT1 ENSGALG00000028872 179.81 1447.30 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
94. RPL9 ENSGALG00000000150 178.63 1437.81 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
95. RPS15 ENSGALG00000015195 178.63 1437.81 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
96. SNRPE ENSGALG00000000137 178.63 1437.81 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
97. RPS21 ENSGALG00000005338 177.44 1428.23 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
98. HMGB2 ENSGALG00000010745 171.53 1380.66 high mobility group box 2 [Source:NCBI gene;Acc:396482]
99. BTF3L4 ENSGALG00000010570 170.35 1371.16 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
100. RPS14 ENSGALG00000004588 170.35 1371.16 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA