Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s58.

Sample reads: 124,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4825.45 38840.05
2. MT-ATP6 MT-ATP6 3028.76 24378.49
3. MT-ND5 MT-ND5 2825.41 22741.72
4. EEF1A EEF1A 2375.04 19116.70
5. MT-CO1 MT-CO1 2131.62 17157.41
6. gga-mir-3527 gga-mir-3527 1869.65 15048.81
7. MT-ND1 MT-ND1 1862.47 14991.02
8. GAPDH ENSGALG00000014442 1851.71 14904.41 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. MT-ND4 MT-ND4 1849.32 14885.18
10. MT-CYB MT-CYB 1773.96 14278.60
11. gga-mir-3533 ENSGALG00000027736 1540.70 12401.09 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. MT-ND3 MT-ND3 1336.75 10759.50
13. NME2 ENSGALG00000002932 955.76 7692.91 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. RPL5 ENSGALG00000005922 902.53 7264.46 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
15. RPL8 ENSGALG00000016232 674.65 5430.26 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
16. RPS3 ENSGALG00000017330 630.39 5074.01 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
17. RPL26 RPL26 625.61 5035.53
18. ENSGALG00000018384 ENSGALG00000018384 623.82 5021.13
19. PPIA ENSGALG00000028600 595.11 4790.04 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
20. ENO1 ENSGALG00000002377 593.91 4780.38 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
21. MDK ENSGALG00000008367 524.53 4221.94 midkine [Source:NCBI gene;Acc:423196]
22. RPL27A ENSGALG00000005948 518.55 4173.81 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
23. CIRBP ENSGALG00000030918 513.77 4135.33 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
24. STMN1 ENSGALG00000001475 482.07 3880.18 stathmin 1 [Source:NCBI gene;Acc:396057]
25. RPL15 ENSGALG00000011290 479.08 3856.11 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
26. RPL7 ENSGALG00000035252 477.28 3841.63 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
27. RPS7 ENSGALG00000016392 471.30 3793.49 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
28. RPS20 ENSGALG00000014432 464.72 3740.53 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
29. RPS6 ENSGALG00000015082 461.73 3716.46 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
30. RPS10 ENSGALG00000002813 461.13 3711.64 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
31. RPL7A ENSGALG00000003197 458.14 3687.57 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
32. TMSB4X ENSGALG00000026383 431.83 3475.80 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
33. RPL31 ENSGALG00000016775 407.30 3278.36 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
34. RPS4 RPS4 406.71 3273.61
35. RPL21 ENSGALG00000027035 399.53 3215.82 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
36. RPS23 ENSGALG00000015617 388.17 3124.38 ribosomal protein S23
37. H3-IX H3-IX 383.98 3090.65
38. RPL23 ENSGALG00000001634 372.61 2999.14 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
39. RPL27 ENSGALG00000002837 369.62 2975.07 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
40. EIF4G2 ENSGALG00000005587 364.24 2931.77 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
41. ENSGALG00000018386 ENSGALG00000018386 352.28 2835.50
42. RPSA 346.90 2792.20 ribosomal protein SA
43. RPS11 ENSGALG00000017299 334.93 2695.85 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
44. RAN ENSGALG00000002569 327.16 2633.31 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
45. MT-ND2 MT-ND2 321.78 2590.01
46. RPS24 ENSGALG00000004871 318.19 2561.11 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
47. EEF1B2 ENSGALG00000008590 316.99 2551.45 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
48. RPS27A ENSGALG00000036790 314.60 2532.22 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
49. RPS15A ENSGALG00000006771 309.22 2488.91 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
50. RPL4 ENSGALG00000007711 308.02 2479.25 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
51. RPS16 ENSGALG00000026490 304.43 2450.36 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
52. ENSGALG00000028992 ENSGALG00000028992 302.04 2431.12
53. SLC25A6_1 ENSGALG00000016691 302.04 2431.12 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
54. RPL14 ENSGALG00000043379 295.46 2378.16 ribosomal protein L14
55. RPS12 ENSGALG00000013990 286.49 2305.96 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
56. SNRPG ENSGALG00000028409 282.30 2272.23 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
57. RPL18A 271.54 2185.63 ribosomal protein L18a
58. RPL6 ENSGALG00000004818 267.35 2151.90 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
59. CRHOA CRHOA 263.16 2118.17
60. HMGN5 ENSGALG00000007131 263.16 2118.17 high mobility group nucleosome binding domain 5, transcript variant X1
61. RPL23A ENSGALG00000003966 259.57 2089.28 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
62. RPS8 ENSGALG00000010124 255.99 2060.46 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
63. RPL32 ENSGALG00000027142 253.00 2036.40 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
64. RPS29 ENSGALG00000012229 248.81 2002.67 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
65. RPL10A ENSGALG00000002644 245.82 1978.61 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
66. RPL13 ENSGALG00000006179 245.82 1978.61 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
67. RPL36 ENSGALG00000000474 236.85 1906.41 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
68. RPS3A ENSGALG00000010077 235.65 1896.75 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
69. RPLP1 ENSGALG00000030878 234.45 1887.09 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
70. ATP6V0C ENSGALG00000009229 233.26 1877.51 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
71. RPS14 ENSGALG00000004588 227.87 1834.13 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
72. RPL38 ENSGALG00000001465 224.29 1805.31 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
73. MIF ENSGALG00000006326 221.30 1781.24 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
74. BTF3L4 ENSGALG00000010570 216.51 1742.69 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
75. ENSGALG00000002696 ENSGALG00000002696 213.52 1718.62
76. CALM CALM 212.32 1708.96
77. RPS15 ENSGALG00000015195 200.96 1617.53 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
78. RPL9 ENSGALG00000000150 199.17 1603.12 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
79. HNRNPDL ENSGALG00000023199 197.37 1588.63 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
80. FKBP4 ENSGALG00000014331 194.98 1569.39 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
81. HMGN2 HMGN2 194.38 1564.56
82. RPL12 ENSGALG00000008806 194.38 1564.56 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
83. RPL36AL ENSGALG00000004952 194.38 1564.56 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
84. MEIS2 ENSGALG00000039118 191.99 1545.33 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
85. RPL35A ENSGALG00000007611, ENSGALG00000041230 191.39 1540.50 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
86. PRDX1 ENSGALG00000010243 189.00 1521.26 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
87. PGK1 ENSGALG00000007936 187.80 1511.60 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
88. CDK1 ENSGALG00000003085 187.20 1506.77 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
89. H2AFZ ENSGALG00000014023 186.61 1502.02 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
90. ATP5G3 184.81 1487.54 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
91. LDHB ENSGALG00000035836 184.21 1482.71 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
92. EIF4EBP1 ENSGALG00000003205 180.63 1453.89 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
93. ERH ENSGALG00000017384 176.44 1420.17 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
94. RPLP2 ENSGALG00000034811 174.64 1405.68 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
95. KPNA2 ENSGALG00000003584 171.65 1381.61 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
96. TCEB3 ENSGALG00000034625 169.86 1367.20 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
97. TPT1 ENSGALG00000028872 169.86 1367.20 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
98. CNN3 ENSGALG00000005597 168.66 1357.54 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
99. RPL3 ENSGALG00000012172 166.87 1343.14 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
100. EEF1D 166.27 1338.31 eukaryotic translation elongation factor 1 delta, transcript variant X13
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA