Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s57.

Sample reads: 124,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 5285.07 42540.90
2. MT-ND5 MT-ND5 4318.12 34757.67
3. MT-CO3 MT-CO3 4311.52 34704.54
4. MT-ND1 MT-ND1 2586.47 20819.17
5. gga-mir-3527 gga-mir-3527 2373.59 19105.64
6. MT-ND4 MT-ND4 2232.52 17970.13
7. MT-CO1 MT-CO1 2139.46 17221.07
8. MT-CYB MT-CYB 2088.53 16811.12
9. EEF1A EEF1A 1682.18 13540.30
10. gga-mir-3533 ENSGALG00000027736 1590.21 12800.01 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. MT-ND3 MT-ND3 1428.63 11499.41
12. GAPDH ENSGALG00000014442 1216.47 9791.68 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. NME2 ENSGALG00000002932 968.05 7792.09 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. PPIA ENSGALG00000028600 789.61 6355.78 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
15. RPL5 ENSGALG00000005922 728.79 5866.22 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. ENSGALG00000018384 ENSGALG00000018384 684.82 5512.29
17. MT-ND2 MT-ND2 652.57 5252.71
18. MDK ENSGALG00000008367 645.24 5193.70 midkine [Source:NCBI gene;Acc:423196]
19. RPL8 ENSGALG00000016232 505.64 4070.03 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. ENO1 ENSGALG00000002377 488.06 3928.52 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
21. RPL15 ENSGALG00000011290 477.43 3842.96 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPS3 ENSGALG00000017330 473.03 3807.54 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
23. RPL26 RPL26 458.01 3686.64
24. RPS10 ENSGALG00000002813 406.71 3273.71 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
25. STMN1 ENSGALG00000001475 404.15 3253.11 stathmin 1 [Source:NCBI gene;Acc:396057]
26. RPS7 ENSGALG00000016392 391.32 3149.84 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
27. RPS20 ENSGALG00000014432 363.48 2925.74 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
28. EIF4G2 ENSGALG00000005587 359.08 2890.33 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
29. RPL27A ENSGALG00000005948 347.35 2795.91 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. CIRBP ENSGALG00000030918 342.96 2760.57 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
31. RPL7 ENSGALG00000035252 338.56 2725.16 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
32. RPL23 ENSGALG00000001634 337.46 2716.30 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
33. RPS6 ENSGALG00000015082 327.57 2636.70 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
34. RPL7A ENSGALG00000003197 325.74 2621.97 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
35. TMSB4X ENSGALG00000026383 321.71 2589.53 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
36. RPL31 ENSGALG00000016775 305.22 2456.79 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
37. RPS24 ENSGALG00000004871 302.65 2436.11 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
38. RPL27 ENSGALG00000002837 300.45 2418.40 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
39. ENSGALG00000018386 ENSGALG00000018386 296.06 2383.06
40. RPS4 RPS4 291.66 2347.65
41. H3-IX H3-IX 283.97 2285.75
42. RPL4 ENSGALG00000007711 283.60 2282.77 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
43. RPSA 282.87 2276.89 ribosomal protein SA
44. RAN ENSGALG00000002569 279.20 2247.35 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
45. RPS23 ENSGALG00000015617 271.87 2188.35 ribosomal protein S23
46. RPS15A ENSGALG00000006771 271.14 2182.48 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
47. ATP6V0C ENSGALG00000009229 270.04 2173.62 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
48. RPL21 ENSGALG00000027035 268.21 2158.89 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
49. EEF1B2 ENSGALG00000008590 267.48 2153.02 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
50. RPS16 ENSGALG00000026490 264.55 2129.43 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
51. RPL14 ENSGALG00000043379 257.95 2076.31 ribosomal protein L14
52. RPS27A ENSGALG00000036790 257.95 2076.31 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
53. HMGN5 ENSGALG00000007131 256.12 2061.58 high mobility group nucleosome binding domain 5, transcript variant X1
54. RPL6 ENSGALG00000004818 253.92 2043.87 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
55. ENSGALG00000028992 ENSGALG00000028992 253.19 2037.99
56. RPS11 ENSGALG00000017299 253.19 2037.99 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
57. SLC25A6_1 ENSGALG00000016691 252.82 2035.01 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
58. RPS3A ENSGALG00000010077 251.36 2023.26 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
59. RPL23A ENSGALG00000003966 244.76 1970.14 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
60. SNRPG ENSGALG00000028409 239.63 1928.84 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
61. RPL32 ENSGALG00000027142 237.43 1911.14 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
62. MEIS2 ENSGALG00000039118 234.13 1884.57 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
63. RPS29 ENSGALG00000012229 229.37 1846.26 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
64. TPT1 ENSGALG00000028872 228.27 1837.40 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
65. RPL35A ENSGALG00000007611, ENSGALG00000041230 225.34 1813.82 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
66. RPL18A 219.11 1763.67 ribosomal protein L18a
67. RPLP1 ENSGALG00000030878 215.81 1737.11 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
68. RPL13 ENSGALG00000006179 215.45 1734.21 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
69. ANP32B ENSGALG00000037483 208.85 1681.09 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
70. HMGN2 HMGN2 204.82 1648.65
71. ENSGALG00000002696 ENSGALG00000002696 202.26 1628.04
72. CALM CALM 201.89 1625.07
73. ATP5G3 200.43 1613.31 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
74. FKBP4 ENSGALG00000014331 198.59 1598.50 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
75. CRHOA CRHOA 197.86 1592.63
76. BTF3L4 ENSGALG00000010570 194.93 1569.04 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
77. MIF ENSGALG00000006326 194.20 1563.17 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
78. RPL38 ENSGALG00000001465 193.46 1557.21 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
79. RPS12 ENSGALG00000013990 192.36 1548.36 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
80. RPL36 ENSGALG00000000474 192.00 1545.46 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
81. RPS14 ENSGALG00000004588 190.90 1536.60 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
82. RPL3 ENSGALG00000012172 189.43 1524.77 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
83. NONO ENSGALG00000005507 186.14 1498.29 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
84. KPNA2 ENSGALG00000003584 180.64 1454.02 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
85. RPS15 ENSGALG00000015195 178.81 1439.29 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
86. EIF1 ENSGALG00000028517 178.07 1433.33 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
87. RPL10A ENSGALG00000002644 175.51 1412.73 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
88. RPL9 ENSGALG00000000150 175.51 1412.73 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
89. LDHB ENSGALG00000035836 174.04 1400.89 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
90. RPL12 ENSGALG00000008806 170.75 1374.41 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
91. EIF3F ENSGALG00000005326 169.65 1365.56 eukaryotic translation initiation factor 3 subunit F
92. IGF2BP3 ENSGALG00000010961 168.55 1356.70 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
93. PRDX1 ENSGALG00000010243 167.08 1344.87 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
94. HMGB2 ENSGALG00000010745 164.88 1327.16 high mobility group box 2 [Source:NCBI gene;Acc:396482]
95. HNRNPDL ENSGALG00000023199 164.15 1321.29 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
96. H2AFZ ENSGALG00000014023 162.32 1306.56 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
97. CDK1 ENSGALG00000003085 160.85 1294.72 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
98. HMGB1 ENSGALG00000042875 159.02 1279.99 high mobility group box 1 [Source:NCBI gene;Acc:395724]
99. RPL36AL ENSGALG00000004952 157.56 1268.24 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
100. PGK1 ENSGALG00000007936 155.72 1253.43 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA