Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s56.

Sample reads: 124,235. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3666.51 29515.08
2. MT-ND5 MT-ND5 3266.70 26296.64
3. MT-ATP6 MT-ATP6 2976.13 23957.58
4. ENSGALG00000018384 ENSGALG00000018384 2475.39 19926.67
5. EEF1A EEF1A 1963.01 15802.06
6. MT-CO1 MT-CO1 1823.27 14677.16
7. MT-ND1 MT-ND1 1746.75 14061.18
8. gga-mir-3527 gga-mir-3527 1712.92 13788.85
9. gga-mir-3533 ENSGALG00000027736 1564.31 12592.56 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. MT-CYB MT-CYB 1546.01 12445.24
11. MT-ND4 MT-ND4 1436.77 11565.87
12. GAPDH ENSGALG00000014442 1427.34 11489.96 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. MT-ND2 MT-ND2 1382.98 11132.87
14. NME2 ENSGALG00000002932 1138.44 9164.34 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. MT-ND3 MT-ND3 1059.14 8525.98
16. PPIA ENSGALG00000028600 929.38 7481.43 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
17. MDK ENSGALG00000008367 749.16 6030.67 midkine [Source:NCBI gene;Acc:423196]
18. RPL5 ENSGALG00000005922 689.83 5553.07 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
19. RPL26 RPL26 624.95 5030.79
20. RPL8 ENSGALG00000016232 576.70 4642.38 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. RPS3 ENSGALG00000017330 518.48 4173.72 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
22. ENSGALG00000018386 ENSGALG00000018386 510.72 4111.25
23. ENO1 ENSGALG00000002377 491.31 3955.00 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
24. RPS20 ENSGALG00000014432 468.57 3771.95 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
25. RPL7 ENSGALG00000035252 454.71 3660.37 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
26. STMN1 ENSGALG00000001475 426.98 3437.15 stathmin 1 [Source:NCBI gene;Acc:396057]
27. RPS10 ENSGALG00000002813 418.11 3365.75 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
28. RPL15 ENSGALG00000011290 415.34 3343.45 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
29. RPL7A ENSGALG00000003197 412.01 3316.64 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
30. RPS7 ENSGALG00000016392 400.37 3222.94 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
31. RPL21 ENSGALG00000027035 379.29 3053.25 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
32. RPL23 ENSGALG00000001634 376.52 3030.95 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
33. RPL27A ENSGALG00000005948 374.86 3017.59 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
34. RPS6 ENSGALG00000015082 373.75 3008.65 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
35. RPS4 RPS4 367.09 2955.04
36. RPS27A ENSGALG00000036790 362.66 2919.38 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
37. EIF4G2 ENSGALG00000005587 357.67 2879.21 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
38. TMSB4X ENSGALG00000026383 352.12 2834.53 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
39. HMGN5 ENSGALG00000007131 339.92 2736.33 high mobility group nucleosome binding domain 5, transcript variant X1
40. RPS24 ENSGALG00000004871 339.92 2736.33 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
41. CIRBP ENSGALG00000030918 334.38 2691.73 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
42. H3-IX H3-IX 326.61 2629.18
43. RPL27 ENSGALG00000002837 324.95 2615.82 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
44. RAN ENSGALG00000002569 316.63 2548.84 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
45. EEF1B2 ENSGALG00000008590 297.78 2397.10 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
46. RPSA 297.78 2397.10 ribosomal protein SA
47. RPS11 ENSGALG00000017299 292.23 2352.43 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
48. ENSGALG00000028992 ENSGALG00000028992 286.69 2307.83
49. RPL31 ENSGALG00000016775 284.47 2289.96 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
50. RPS23 ENSGALG00000015617 284.47 2289.96 ribosomal protein S23
51. RPS15A ENSGALG00000006771 278.37 2240.85 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
52. RPL32 ENSGALG00000027142 275.04 2214.05 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
53. RPS16 ENSGALG00000026490 267.28 2151.58 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
54. ATP6V0C ENSGALG00000009229 266.17 2142.64 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
55. SLC25A6_1 ENSGALG00000016691 265.06 2133.71 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
56. RPL14 ENSGALG00000043379 261.73 2106.90 ribosomal protein L14
57. RPL23A ENSGALG00000003966 256.19 2062.31 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
58. RPL18A 246.76 1986.40 ribosomal protein L18a
59. RPL4 ENSGALG00000007711 246.21 1981.97 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
60. ATP5G3 245.65 1977.46 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
61. RPS29 ENSGALG00000012229 241.22 1941.80 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
62. EIF1 ENSGALG00000028517 240.11 1932.86 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
63. RPS3A ENSGALG00000010077 240.11 1932.86 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
64. RPLP1 ENSGALG00000030878 239.55 1928.36 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
65. TPT1 ENSGALG00000028872 239.00 1923.93 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
66. RPS12 ENSGALG00000013990 235.67 1897.12 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
67. NONO ENSGALG00000005507 235.12 1892.70 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
68. SNRPG ENSGALG00000028409 225.69 1816.78 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
69. RPL10A ENSGALG00000002644 221.25 1781.04 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
70. RPL6 ENSGALG00000004818 220.15 1772.19 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
71. RPL36 ENSGALG00000000474 217.37 1749.81 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
72. ENSGALG00000002696 ENSGALG00000002696 216.26 1740.87
73. HMGN2 HMGN2 216.26 1740.87
74. RPL3 ENSGALG00000012172 214.05 1723.08 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
75. RPS14 ENSGALG00000004588 214.05 1723.08 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
76. RPL13 ENSGALG00000006179 210.72 1696.28 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
77. BTF3L4 ENSGALG00000010570 205.17 1651.60 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
78. CRHOA CRHOA 204.06 1642.66
79. H2AFZ ENSGALG00000014023 202.96 1633.81 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
80. RPL38 ENSGALG00000001465 200.74 1615.94 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
81. RPL9 ENSGALG00000000150 199.63 1607.00 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
82. HNRNPDL ENSGALG00000023199 199.07 1602.50 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
83. MIF ENSGALG00000006326 199.07 1602.50 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
84. RPL35A ENSGALG00000007611, ENSGALG00000041230 197.96 1593.56 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
85. ANP32B ENSGALG00000037483 196.30 1580.20 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
86. LDHB ENSGALG00000035836 195.19 1571.26 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
87. RPL12 ENSGALG00000008806 195.19 1571.26 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
88. KPNA2 ENSGALG00000003584 193.53 1557.90 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
89. MEIS2 ENSGALG00000039118 193.53 1557.90 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
90. ERH ENSGALG00000017384 191.31 1540.03 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
91. CALM CALM 190.20 1531.09
92. CDK1 ENSGALG00000003085 189.65 1526.67 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
93. FKBP4 ENSGALG00000014331 189.09 1522.16 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
94. RPS15 ENSGALG00000015195 189.09 1522.16 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
95. PGK1 ENSGALG00000007936 188.54 1517.73 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
96. RPLP2 ENSGALG00000034811 182.99 1473.05 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
97. EIF3F ENSGALG00000005326 181.88 1464.12 eukaryotic translation initiation factor 3 subunit F
98. HMGB1 ENSGALG00000042875 181.33 1459.69 high mobility group box 1 [Source:NCBI gene;Acc:395724]
99. TCEB3 ENSGALG00000034625 178.00 1432.88 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
100. RPS8 ENSGALG00000010124 172.46 1388.29 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA