Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s54.

Sample reads: 124,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ND5 MT-ND5 4456.02 35868.28
2. MT-CO3 MT-CO3 3984.18 32070.25
3. MT-ATP6 MT-ATP6 3852.43 31009.74
4. ENSGALG00000018384 ENSGALG00000018384 2410.03 19399.29
5. MT-ND1 MT-ND1 2081.20 16752.41
6. EEF1A EEF1A 1944.36 15650.93
7. gga-mir-3527 gga-mir-3527 1942.18 15633.38
8. MT-CO1 MT-CO1 1822.77 14672.20
9. MT-ND4 MT-ND4 1778.85 14318.67
10. MT-CYB MT-CYB 1761.07 14175.55
11. gga-mir-3533 ENSGALG00000027736 1645.65 13246.49 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. GAPDH ENSGALG00000014442 1310.64 10549.86 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. MT-ND2 MT-ND2 1170.54 9422.14
14. MT-ND3 MT-ND3 1073.99 8644.97
15. NME2 ENSGALG00000002932 1037.69 8352.78 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. PPIA ENSGALG00000028600 802.50 6459.64 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
17. RPL5 ENSGALG00000005922 743.34 5983.44 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. MDK ENSGALG00000008367 674.74 5431.25 midkine [Source:NCBI gene;Acc:423196]
19. RPL26 RPL26 566.21 4557.65
20. RPL8 ENSGALG00000016232 556.78 4481.74 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. RPS3 ENSGALG00000017330 529.19 4259.66 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
22. ENO1 ENSGALG00000002377 491.44 3955.80 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
23. STMN1 ENSGALG00000001475 443.53 3570.15 stathmin 1 [Source:NCBI gene;Acc:396057]
24. RPL15 ENSGALG00000011290 442.08 3558.48 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
25. RPL7 ENSGALG00000035252 424.66 3418.26 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
26. RPS20 ENSGALG00000014432 423.93 3412.38 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
27. RPS7 ENSGALG00000016392 413.77 3330.60 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
28. RPS10 ENSGALG00000002813 393.81 3169.93 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
29. RPL27A ENSGALG00000005948 380.02 3058.93 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. RPS27A ENSGALG00000036790 377.11 3035.51 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
31. RPS6 ENSGALG00000015082 374.93 3017.96 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
32. TMSB4X ENSGALG00000026383 374.57 3015.06 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
33. CIRBP ENSGALG00000030918 372.03 2994.62 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
34. RPL23 ENSGALG00000001634 366.22 2947.85 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
35. ENSGALG00000018386 ENSGALG00000018386 360.42 2901.16
36. RPL7A ENSGALG00000003197 353.88 2848.52 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
37. EIF4G2 ENSGALG00000005587 338.28 2722.95 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
38. RPS4 RPS4 325.94 2623.62
39. RPL21 ENSGALG00000027035 321.94 2591.42 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
40. RPL27 ENSGALG00000002837 310.69 2500.87 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
41. RPL31 ENSGALG00000016775 310.69 2500.87 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
42. H3-IX H3-IX 300.89 2421.98
43. RPSA 298.71 2404.44 ribosomal protein SA
44. RAN ENSGALG00000002569 297.62 2395.66 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
45. HMGN5 ENSGALG00000007131 296.17 2383.99 high mobility group nucleosome binding domain 5, transcript variant X1
46. ENSGALG00000028992 ENSGALG00000028992 294.72 2372.32
47. EEF1B2 ENSGALG00000008590 292.91 2357.75 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
48. SLC25A6_1 ENSGALG00000016691 292.18 2351.87 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
49. RPS23 ENSGALG00000015617 288.91 2325.55 ribosomal protein S23
50. RPS3A ENSGALG00000010077 288.91 2325.55 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
51. RPS24 ENSGALG00000004871 286.74 2308.08 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
52. RPL4 ENSGALG00000007711 283.47 2281.76 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
53. RPS16 ENSGALG00000026490 269.68 2170.76 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
54. ATP6V0C ENSGALG00000009229 261.33 2103.55 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
55. RPS11 ENSGALG00000017299 252.26 2030.54 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
56. RPS29 ENSGALG00000012229 252.26 2030.54 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
57. RPL14 ENSGALG00000043379 251.17 2021.77 ribosomal protein L14
58. RPL32 ENSGALG00000027142 244.27 1966.23 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
59. RPL23A ENSGALG00000003966 241.37 1942.88 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
60. RPS15A ENSGALG00000006771 241.37 1942.88 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
61. SNRPG ENSGALG00000028409 238.46 1919.46 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
62. RPLP1 ENSGALG00000030878 229.03 1843.55 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
63. RPL35A ENSGALG00000007611, ENSGALG00000041230 226.49 1823.11 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
64. ATP5G3 225.03 1811.36 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
65. RPL13 ENSGALG00000006179 225.03 1811.36 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
66. MEIS2 ENSGALG00000039118 224.31 1805.56 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
67. FKBP4 ENSGALG00000014331 223.58 1799.68 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
68. EIF1 ENSGALG00000028517 220.68 1776.34 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
69. RPL18A 218.14 1755.90 ribosomal protein L18a
70. RPL6 ENSGALG00000004818 216.69 1744.22 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
71. RPS12 ENSGALG00000013990 215.23 1732.47 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
72. HNRNPDL ENSGALG00000023199 213.42 1717.90 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
73. TPT1 ENSGALG00000028872 213.06 1715.00 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
74. RPL3 ENSGALG00000012172 208.70 1679.91 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
75. RPS14 ENSGALG00000004588 206.89 1665.34 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
76. ANP32B ENSGALG00000037483 205.43 1653.59 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
77. CRHOA CRHOA 201.80 1624.37
78. ENSGALG00000002696 ENSGALG00000002696 200.72 1615.68
79. RPL12 ENSGALG00000008806 193.82 1560.13 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
80. RPL36 ENSGALG00000000474 192.73 1551.36 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
81. RPL10A ENSGALG00000002644 192.00 1545.48 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
82. CALM CALM 190.92 1536.79
83. RPL38 ENSGALG00000001465 190.55 1533.81 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
84. H2AFZ ENSGALG00000014023 188.37 1516.27 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
85. BTF3L4 ENSGALG00000010570 186.20 1498.80 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
86. NONO ENSGALG00000005507 185.83 1495.82 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
87. RPL9 ENSGALG00000000150 181.84 1463.70 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
88. HMGN2 HMGN2 178.57 1437.38
89. LDHB ENSGALG00000035836 176.76 1422.81 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
90. MIF ENSGALG00000006326 173.49 1396.49 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
91. EIF3F ENSGALG00000005326 171.68 1381.92 eukaryotic translation initiation factor 3 subunit F
92. ERH ENSGALG00000017384 163.69 1317.61 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
93. KPNA2 ENSGALG00000003584 163.69 1317.61 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
94. TCF12 ENSGALG00000004304 162.24 1305.93 transcription factor 12 [Source:NCBI gene;Acc:396334]
95. EIF4EBP1 ENSGALG00000003205 160.79 1294.26 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
96. RPS8 ENSGALG00000010124 160.79 1294.26 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
97. TCEB3 ENSGALG00000034625 159.34 1282.59 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
98. CNN3 ENSGALG00000005597 157.52 1267.94 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
99. SNRPE ENSGALG00000000137 157.16 1265.04 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
100. HMGB1 ENSGALG00000042875 156.43 1259.17 high mobility group box 1 [Source:NCBI gene;Acc:395724]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA