Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s5.

Sample reads: 124,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. ENSGALG00000018384 ENSGALG00000018384 4269.02 34361.01
2. MT-ND5 MT-ND5 3435.98 27655.93
3. MT-CO3 MT-CO3 3227.12 25974.84
4. MT-ATP6 MT-ATP6 2327.68 18735.31
5. MT-ND1 MT-ND1 1762.66 14187.51
6. EEF1A EEF1A 1739.72 14002.87
7. gga-mir-3527 gga-mir-3527 1561.04 12564.69
8. MT-ND4 MT-ND4 1497.05 12049.64
9. MT-CO1 MT-CO1 1493.43 12020.50
10. MT-CYB MT-CYB 1424.62 11466.65
11. gga-mir-3533 ENSGALG00000027736 1399.26 11262.53 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. GAPDH ENSGALG00000014442 1117.96 8998.37 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. NME2 ENSGALG00000002932 870.46 7006.26 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. PPIA ENSGALG00000028600 728.00 5859.61 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
15. TMSB4X ENSGALG00000026383 649.53 5228.02 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
16. RPL5 ENSGALG00000005922 620.55 4994.76 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. MT-ND3 MT-ND3 619.35 4985.10
18. MT-ND2 MT-ND2 556.57 4479.79
19. RPL26 RPL26 516.72 4159.04
20. RPL8 ENSGALG00000016232 510.69 4110.50 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. ENO1 ENSGALG00000002377 481.71 3877.25 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
22. ENSGALG00000018386 ENSGALG00000018386 451.53 3634.33
23. EIF4G2 ENSGALG00000005587 431.01 3469.17 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
24. CIRBP ENSGALG00000030918 428.59 3449.69 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
25. RPS3 ENSGALG00000017330 427.38 3439.95 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
26. RPL27A ENSGALG00000005948 417.73 3362.28 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
27. RPL7 ENSGALG00000035252 406.86 3274.78 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
28. RPL15 ENSGALG00000011290 400.82 3226.17 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
29. STMN1 ENSGALG00000001475 397.20 3197.03 stathmin 1 [Source:NCBI gene;Acc:396057]
30. RPL7A ENSGALG00000003197 395.99 3187.29 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. RPS6 ENSGALG00000015082 387.54 3119.28 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
32. RAN ENSGALG00000002569 377.89 3041.61 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
33. MDK ENSGALG00000008367 376.68 3031.87 midkine [Source:NCBI gene;Acc:423196]
34. CRABP-I ENSGALG00000003193 375.47 3022.13 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
35. HMGN5 ENSGALG00000007131 370.64 2983.25 high mobility group nucleosome binding domain 5, transcript variant X1
36. LDHB ENSGALG00000035836 358.57 2886.10 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
37. RPS7 ENSGALG00000016392 353.74 2847.23 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
38. RPL23 ENSGALG00000001634 348.91 2808.35 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
39. RPL21 ENSGALG00000027035 344.08 2769.47 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
40. RPS27A ENSGALG00000036790 334.42 2691.72 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
41. RPS23 ENSGALG00000015617 316.31 2545.95 ribosomal protein S23
42. RPS20 ENSGALG00000014432 311.48 2507.08 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
43. RPS24 ENSGALG00000004871 309.07 2487.68 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
44. RPS10 ENSGALG00000002813 304.24 2448.80 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
45. RPL27 ENSGALG00000002837 301.83 2429.41 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
46. RPL31 ENSGALG00000016775 301.83 2429.41 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
47. RPS4 RPS4 299.41 2409.93
48. SNRPG ENSGALG00000028409 299.41 2409.93 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
49. RPS11 ENSGALG00000017299 293.37 2361.31 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
50. ATP6V0C ENSGALG00000009229 290.96 2341.91 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
51. H3-IX H3-IX 277.68 2235.02
52. RPSA 275.26 2215.55 ribosomal protein SA
53. SLC25A6_1 ENSGALG00000016691 272.85 2196.15 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
54. RPL18A 271.64 2186.41 ribosomal protein L18a
55. RPL14 ENSGALG00000043379 268.02 2157.27 ribosomal protein L14
56. RPL6 ENSGALG00000004818 265.61 2137.87 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
57. H2AFZ ENSGALG00000014023 261.98 2108.66 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
58. MIF ENSGALG00000006326 255.95 2060.12 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
59. RPL32 ENSGALG00000027142 255.95 2060.12 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
60. EEF1B2 ENSGALG00000008590 251.12 2021.25 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
61. RPS16 ENSGALG00000026490 249.91 2011.51 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
62. HMGN2 HMGN2 240.25 1933.75
63. HNRNPDL ENSGALG00000023199 240.25 1933.75 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
64. RPLP1 ENSGALG00000030878 239.05 1924.09 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
65. RPS15A ENSGALG00000006771 237.84 1914.36 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
66. RPL23A ENSGALG00000003966 229.39 1846.34 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
67. RPL36 ENSGALG00000000474 229.39 1846.34 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
68. ENSGALG00000028992 ENSGALG00000028992 228.18 1836.60
69. HMGB1 ENSGALG00000042875 228.18 1836.60 high mobility group box 1 [Source:NCBI gene;Acc:395724]
70. NONO ENSGALG00000005507 225.77 1817.20 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
71. EIF1 ENSGALG00000028517 219.73 1768.59 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
72. CALM CALM 216.11 1739.45
73. RPS29 ENSGALG00000012229 214.90 1729.71 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
74. RPL4 ENSGALG00000007711 210.07 1690.84 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
75. RPL35A ENSGALG00000007611, ENSGALG00000041230 206.45 1661.70 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
76. SNRPE ENSGALG00000000137 205.24 1651.96 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
77. ANP32B ENSGALG00000037483 204.03 1642.22 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
78. CRHOA CRHOA 204.03 1642.22
79. TPT1 ENSGALG00000028872 204.03 1642.22 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
80. ATP5G3 202.83 1632.56 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
81. RPS14 ENSGALG00000004588 202.83 1632.56 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
82. RPS12 ENSGALG00000013990 199.20 1603.35 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
83. RPLP2 ENSGALG00000034811 198.00 1593.69 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
84. MEIS2 ENSGALG00000039118 196.79 1583.95 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
85. HMGB2 ENSGALG00000010745 189.55 1525.67 high mobility group box 2 [Source:NCBI gene;Acc:396482]
86. NUCKS1 ENSGALG00000000708 188.34 1515.93 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
87. RPL3 ENSGALG00000012172 188.34 1515.93 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
88. HSP90AB1 ENSGALG00000010175 187.13 1506.19 heat shock protein 90 alpha family class B member 1 [Source:NCBI gene;Acc:396188]
89. RPL12 ENSGALG00000008806 187.13 1506.19 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
90. ENSGALG00000002696 ENSGALG00000002696 185.92 1496.46
91. RPS3A ENSGALG00000010077 183.51 1477.06 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
92. BTF3L4 ENSGALG00000010570 182.30 1467.32 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
93. EIF5A2 ENSGALG00000009309 182.30 1467.32 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
94. KPNA2 ENSGALG00000003584 181.10 1457.66 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
95. RPL13 ENSGALG00000006179 181.10 1457.66 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
96. PRDX1 ENSGALG00000010243 177.47 1428.44 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
97. RPL38 ENSGALG00000001465 177.47 1428.44 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
98. HSPA8 ENSGALG00000006512 173.85 1399.30 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
99. RPL10A ENSGALG00000002644 172.64 1389.57 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
100. ERH ENSGALG00000017384 171.44 1379.91 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA