Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s49.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ND5 MT-ND5 4506.43 36273.88
2. MT-ATP6 MT-ATP6 3506.14 28222.18
3. MT-CO3 MT-CO3 3294.92 26522.00
4. ENSGALG00000018384 ENSGALG00000018384 2033.15 16365.56
5. EEF1A EEF1A 1929.87 15534.22
6. MT-CYB MT-CYB 1731.67 13938.84
7. MT-ND4 MT-ND4 1591.16 12807.82
8. gga-mir-3533 ENSGALG00000027736 1514.86 12193.65 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. MT-ND1 MT-ND1 1493.46 12021.40
10. MT-CO1 MT-CO1 1416.23 11399.75
11. gga-mir-3527 gga-mir-3527 1396.69 11242.46
12. GAPDH ENSGALG00000014442 1067.29 8591.00 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. NME2 ENSGALG00000002932 1052.40 8471.15 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. MDK ENSGALG00000008367 919.34 7400.10 midkine [Source:NCBI gene;Acc:423196]
15. MT-ND3 MT-ND3 889.56 7160.39
16. PPIA ENSGALG00000028600 742.54 5976.97 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
17. MT-ND2 MT-ND2 653.21 5257.92
18. RPL8 ENSGALG00000016232 563.89 4538.95 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. RPL26 RPL26 528.53 4254.33
20. RPL5 ENSGALG00000005922 522.01 4201.85 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
21. CIRBP ENSGALG00000030918 484.79 3902.25 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
22. TMSB4X ENSGALG00000026383 477.35 3842.36 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
23. EIF4G2 ENSGALG00000005587 437.34 3520.31 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
24. RPS3 ENSGALG00000017330 437.34 3520.31 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
25. RPL7A ENSGALG00000003197 427.10 3437.88 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
26. ENO1 ENSGALG00000002377 417.80 3363.02 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
27. ENSGALG00000018386 ENSGALG00000018386 417.80 3363.02
28. RPS7 ENSGALG00000016392 409.42 3295.57 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
29. RPS6 ENSGALG00000015082 408.49 3288.08 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
30. STMN1 ENSGALG00000001475 407.56 3280.60 stathmin 1 [Source:NCBI gene;Acc:396057]
31. RPS27A ENSGALG00000036790 401.05 3228.20 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
32. RPL15 ENSGALG00000011290 391.74 3153.26 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
33. ATP6V0C ENSGALG00000009229 381.51 3070.91 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
34. RPL7 ENSGALG00000035252 376.85 3033.40 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
35. RPL27A ENSGALG00000005948 375.92 3025.92 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
36. RPL21 ENSGALG00000027035 329.40 2651.46 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
37. RPS23 ENSGALG00000015617 327.54 2636.49 ribosomal protein S23
38. RAN ENSGALG00000002569 322.88 2598.98 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
39. RPS20 ENSGALG00000014432 319.16 2569.03 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
40. MEIS2 ENSGALG00000039118 316.37 2546.58 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
41. RPS10 ENSGALG00000002813 313.58 2524.12 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
42. RPL23 ENSGALG00000001634 308.93 2486.69 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
43. H3-IX H3-IX 306.14 2464.23
44. RPL31 ENSGALG00000016775 297.76 2396.78 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
45. RPS4 RPS4 292.18 2351.86
46. EEF1B2 ENSGALG00000008590 291.25 2344.38 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
47. RPL27 ENSGALG00000002837 284.73 2291.89 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
48. HMGN5 ENSGALG00000007131 278.22 2239.49 high mobility group nucleosome binding domain 5, transcript variant X1
49. ENSGALG00000028992 ENSGALG00000028992 276.36 2224.52
50. RPS24 ENSGALG00000004871 274.50 2209.55 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
51. RPSA 266.12 2142.10 ribosomal protein SA
52. HNRNPDL ENSGALG00000023199 259.61 2089.69 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
53. ALDH1A2 ENSGALG00000004270 255.89 2059.75 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
54. SNRPG ENSGALG00000028409 255.89 2059.75 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
55. RPS15A ENSGALG00000006771 254.03 2044.78 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
56. NONO ENSGALG00000005507 252.17 2029.81 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
57. RPL14 ENSGALG00000043379 245.65 1977.33 ribosomal protein L14
58. RPL32 ENSGALG00000027142 242.86 1954.87 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
59. RPL6 ENSGALG00000004818 242.86 1954.87 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
60. SLC25A6_1 ENSGALG00000016691 242.86 1954.87 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
61. ANP32B ENSGALG00000037483 241.93 1947.38 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
62. FKBP4 ENSGALG00000014331 240.07 1932.41 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
63. LDHB ENSGALG00000035836 238.21 1917.44 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
64. RPL23A ENSGALG00000003966 235.42 1894.98 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
65. RPS16 ENSGALG00000026490 232.63 1872.52 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
66. EIF1 ENSGALG00000028517 227.97 1835.01 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
67. RPL4 ENSGALG00000007711 220.53 1775.13 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
68. RPLP1 ENSGALG00000030878 218.67 1760.15 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
69. RPS11 ENSGALG00000017299 217.74 1752.67 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
70. RPL18A 214.95 1730.21 ribosomal protein L18a
71. TPT1 ENSGALG00000028872 214.95 1730.21 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
72. CALM CALM 212.15 1707.67
73. H2AFZ ENSGALG00000014023 209.36 1685.21 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
74. EIF5A2 ENSGALG00000009309 207.50 1670.24 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
75. RPL36 ENSGALG00000000474 205.64 1655.27 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
76. HMGB1 ENSGALG00000042875 204.71 1647.78 high mobility group box 1 [Source:NCBI gene;Acc:395724]
77. RPS12 ENSGALG00000013990 204.71 1647.78 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
78. EIF3F ENSGALG00000005326 203.78 1640.30 eukaryotic translation initiation factor 3 subunit F
79. RPL3 ENSGALG00000012172 202.85 1632.81 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
80. BTF3L4 ENSGALG00000010570 200.06 1610.35 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
81. HMGN2 HMGN2 199.13 1602.87
82. ATP5G3 197.27 1587.90 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
83. TCF12 ENSGALG00000004304 194.48 1565.44 transcription factor 12 [Source:NCBI gene;Acc:396334]
84. CRHOA CRHOA 192.61 1550.39
85. RPL10A ENSGALG00000002644 189.82 1527.93 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
86. RPS3A ENSGALG00000010077 189.82 1527.93 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
87. HMGB2 ENSGALG00000010745 187.03 1505.47 high mobility group box 2 [Source:NCBI gene;Acc:396482]
88. KPNA2 ENSGALG00000003584 184.24 1483.01 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
89. HSPA8 ENSGALG00000006512 181.45 1460.56 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
90. RPL12 ENSGALG00000008806 180.52 1453.07 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
91. RPS29 ENSGALG00000012229 180.52 1453.07 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
92. RPL35A ENSGALG00000007611, ENSGALG00000041230 178.66 1438.10 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
93. RPS14 ENSGALG00000004588 175.87 1415.64 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
94. RPLP2 ENSGALG00000034811 173.07 1393.10 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
95. PRDX1 ENSGALG00000010243 172.14 1385.62 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
96. RPL13 ENSGALG00000006179 171.21 1378.13 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
97. DDX3X ENSGALG00000016231 170.28 1370.65 DEAD-box helicase 3 X-linked [Source:NCBI gene;Acc:418567]
98. CDK1 ENSGALG00000003085 169.35 1363.16 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
99. IGF2BP3 ENSGALG00000010961 164.70 1325.73 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
100. NUCKS1 ENSGALG00000000708 161.91 1303.27 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA