Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s48.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3582.53 28837.86
2. MT-ATP6 MT-ATP6 3106.25 25004.01
3. MT-ND5 MT-ND5 3073.72 24742.16
4. EEF1A EEF1A 1918.01 15439.18
5. MT-CO1 MT-CO1 1854.18 14925.37
6. gga-mir-3527 gga-mir-3527 1810.60 14574.57
7. MT-CYB MT-CYB 1669.43 13438.21
8. ENSGALG00000018384 ENSGALG00000018384 1629.54 13117.11
9. MT-ND4 MT-ND4 1503.72 12104.31
10. MT-ND1 MT-ND1 1495.13 12035.17
11. gga-mir-3533 ENSGALG00000027736 1380.97 11116.23 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. GAPDH ENSGALG00000014442 1182.11 9515.49 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. NME2 ENSGALG00000002932 887.50 7144.00 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. MT-ND3 MT-ND3 873.38 7030.34
15. MDK ENSGALG00000008367 824.28 6635.11 midkine [Source:NCBI gene;Acc:423196]
16. PPIA ENSGALG00000028600 806.48 6491.83 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
17. MT-ND2 MT-ND2 753.70 6066.97
18. RPL5 ENSGALG00000005922 614.38 4945.50 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
19. RPL8 ENSGALG00000016232 579.39 4663.85 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. RPL26 RPL26 563.43 4535.38
21. RPS3 ENSGALG00000017330 468.30 3769.62 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
22. ENO1 ENSGALG00000002377 448.05 3606.61 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
23. CIRBP ENSGALG00000030918 445.59 3586.81 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
24. RPL7 ENSGALG00000035252 427.18 3438.62 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
25. RPS7 ENSGALG00000016392 418.59 3369.47 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
26. STMN1 ENSGALG00000001475 411.83 3315.06 stathmin 1 [Source:NCBI gene;Acc:396057]
27. RPL7A ENSGALG00000003197 403.86 3250.90 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
28. RPS10 ENSGALG00000002813 389.74 3137.24 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
29. TMSB4X ENSGALG00000026383 389.74 3137.24 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
30. EIF4G2 ENSGALG00000005587 384.83 3097.72 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
31. RPL27A ENSGALG00000005948 379.92 3058.20 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. RPL15 ENSGALG00000011290 377.46 3038.39 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
33. RPL23 ENSGALG00000001634 375.01 3018.67 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
34. RPS27A ENSGALG00000036790 348.62 2806.24 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
35. ENSGALG00000018386 ENSGALG00000018386 346.16 2786.44
36. RPS6 ENSGALG00000015082 344.32 2771.63 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
37. RPS4 RPS4 338.80 2727.20
38. RPS20 ENSGALG00000014432 335.73 2702.49 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
39. RAN ENSGALG00000002569 333.27 2682.68 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
40. RPL21 ENSGALG00000027035 322.23 2593.82 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
41. ATP6V0C ENSGALG00000009229 314.86 2534.49 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
42. HMGN5 ENSGALG00000007131 311.79 2509.78 high mobility group nucleosome binding domain 5, transcript variant X1
43. H3-IX H3-IX 311.18 2504.87
44. RPL31 ENSGALG00000016775 305.04 2455.44 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
45. RPS24 ENSGALG00000004871 301.97 2430.73 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
46. RPL27 ENSGALG00000002837 297.06 2391.21 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
47. RPS23 ENSGALG00000015617 292.76 2356.60 ribosomal protein S23
48. RPSA 292.15 2351.68 ribosomal protein SA
49. RPL14 ENSGALG00000043379 286.01 2302.26 ribosomal protein L14
50. RPS11 ENSGALG00000017299 284.17 2287.45 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
51. EEF1B2 ENSGALG00000008590 282.94 2277.55 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
52. MEIS2 ENSGALG00000039118 278.65 2243.02 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
53. SLC25A6_1 ENSGALG00000016691 271.28 2183.69 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
54. RPL4 ENSGALG00000007711 265.15 2134.35 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
55. RPS16 ENSGALG00000026490 263.92 2124.45 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
56. ENSGALG00000028992 ENSGALG00000028992 258.39 2079.93
57. ALDH1A2 ENSGALG00000004270 254.10 2045.40 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
58. RPS15A ENSGALG00000006771 251.64 2025.60 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
59. HNRNPDL ENSGALG00000023199 247.35 1991.06 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
60. RPS3A ENSGALG00000010077 244.89 1971.26 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
61. RPL18A 242.44 1951.54 ribosomal protein L18a
62. RPL6 ENSGALG00000004818 241.82 1946.55 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
63. RPL23A ENSGALG00000003966 241.21 1941.64 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
64. RPS29 ENSGALG00000012229 241.21 1941.64 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
65. ATP5G3 239.98 1931.74 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
66. SNRPG ENSGALG00000028409 239.98 1931.74 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
67. RPL32 ENSGALG00000027142 234.46 1887.30 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
68. LDHB ENSGALG00000035836 227.09 1827.98 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
69. RPL36 ENSGALG00000000474 227.09 1827.98 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
70. RPL13 ENSGALG00000006179 222.18 1788.46 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
71. H2AFZ ENSGALG00000014023 220.95 1778.55 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
72. RPS12 ENSGALG00000013990 217.27 1748.93 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
73. HMGN2 HMGN2 215.43 1734.12
74. RPLP1 ENSGALG00000030878 215.43 1734.12 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
75. ANP32B ENSGALG00000037483 211.75 1704.50 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
76. CALM CALM 211.75 1704.50
77. CRHOA CRHOA 209.29 1684.70
78. RPS15 ENSGALG00000015195 208.07 1674.88 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
79. EIF1 ENSGALG00000028517 207.45 1669.89 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
80. CDK1 ENSGALG00000003085 206.84 1664.98 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
81. RPL3 ENSGALG00000012172 206.84 1664.98 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
82. RPL10A ENSGALG00000002644 205.00 1650.16 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
83. TPT1 ENSGALG00000028872 205.00 1650.16 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
84. BTF3L4 ENSGALG00000010570 201.93 1625.45 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
85. KPNA2 ENSGALG00000003584 198.86 1600.74 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
86. RPS14 ENSGALG00000004588 198.25 1595.83 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
87. RPS8 ENSGALG00000010124 197.02 1585.93 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
88. RPL35A ENSGALG00000007611, ENSGALG00000041230 195.18 1571.12 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
89. CNN3 ENSGALG00000005597 193.95 1561.22 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
90. RPL38 ENSGALG00000001465 193.95 1561.22 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
91. FKBP4 ENSGALG00000014331 191.49 1541.41 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
92. ENSGALG00000002696 ENSGALG00000002696 189.04 1521.69
93. HSPA8 ENSGALG00000006512 184.74 1487.08 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
94. PRDX1 ENSGALG00000010243 182.29 1467.36 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
95. NONO ENSGALG00000005507 178.60 1437.66 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
96. TCEB3 ENSGALG00000034625 177.38 1427.83 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
97. TCF12 ENSGALG00000004304 174.92 1408.03 transcription factor 12 [Source:NCBI gene;Acc:396334]
98. IGF2BP3 ENSGALG00000010961 170.63 1373.50 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
99. NUCKS1 ENSGALG00000000708 168.17 1353.70 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
100. EIF5A2 ENSGALG00000009309 167.56 1348.79 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA