Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s44.

Sample reads: 124,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 3840.40 30912.43
2. MT-CO3 MT-CO3 3490.61 28096.87
3. MT-ND5 MT-ND5 3151.75 25369.30
4. gga-mir-3527 gga-mir-3527 1940.24 15617.52
5. EEF1A EEF1A 1878.30 15118.95
6. MT-CO1 MT-CO1 1614.13 12992.57
7. ENSGALG00000018384 ENSGALG00000018384 1548.55 12464.70
8. MT-ND4 MT-ND4 1539.44 12391.37
9. MT-CYB MT-CYB 1499.36 12068.76
10. gga-mir-3533 ENSGALG00000027736 1328.11 10690.32 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. MT-ND1 MT-ND1 1298.96 10455.68
12. GAPDH ENSGALG00000014442 1083.98 8725.25 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. MT-ND3 MT-ND3 976.50 7860.12
14. NME2 ENSGALG00000002932 972.85 7830.74 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. PPIA ENSGALG00000028600 694.11 5587.08 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. RPL8 ENSGALG00000016232 657.68 5293.85 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
17. MDK ENSGALG00000008367 650.39 5235.17 midkine [Source:NCBI gene;Acc:423196]
18. RPL5 ENSGALG00000005922 641.28 5161.84 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
19. RPL26 RPL26 603.02 4853.87
20. TMSB4X ENSGALG00000026383 522.86 4208.64 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
21. RPS6 ENSGALG00000015082 490.07 3944.71 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
22. MT-ND2 MT-ND2 479.14 3856.73
23. ENSGALG00000018386 ENSGALG00000018386 470.03 3783.40
24. RPL7 ENSGALG00000035252 453.63 3651.39 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
25. EIF4G2 ENSGALG00000005587 446.35 3592.79 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
26. RPS7 ENSGALG00000016392 439.06 3534.11 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
27. STMN1 ENSGALG00000001475 439.06 3534.11 stathmin 1 [Source:NCBI gene;Acc:396057]
28. RPL27A ENSGALG00000005948 431.77 3475.43 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
29. CIRBP ENSGALG00000030918 428.13 3446.14 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
30. RPL7A ENSGALG00000003197 388.05 3123.52 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. ENO1 ENSGALG00000002377 377.12 3035.54 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
32. RPS4 RPS4 377.12 3035.54
33. RPL15 ENSGALG00000011290 371.65 2991.51 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
34. HMGN5 ENSGALG00000007131 364.36 2932.83 high mobility group nucleosome binding domain 5, transcript variant X1
35. RPS10 ENSGALG00000002813 357.08 2874.23 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
36. RPL23 ENSGALG00000001634 353.43 2844.85 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
37. RPS23 ENSGALG00000015617 353.43 2844.85 ribosomal protein S23
38. RPL21 ENSGALG00000027035 349.79 2815.56 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
39. RPS27A ENSGALG00000036790 349.79 2815.56 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
40. RPS3 ENSGALG00000017330 349.79 2815.56 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
41. RPS20 ENSGALG00000014432 344.32 2771.53 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
42. RPS24 ENSGALG00000004871 344.32 2771.53 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
43. RPS15A ENSGALG00000006771 331.57 2668.90 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
44. H3-IX H3-IX 329.75 2654.25
45. RAN ENSGALG00000002569 320.64 2580.92 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
46. SNRPG ENSGALG00000028409 318.82 2566.27 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
47. ENSGALG00000028992 ENSGALG00000028992 315.18 2536.97
48. RPSA 315.18 2536.97 ribosomal protein SA
49. ATP6V0C ENSGALG00000009229 313.35 2522.24 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
50. RPL27 ENSGALG00000002837 313.35 2522.24 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
51. EEF1B2 ENSGALG00000008590 302.42 2434.26 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
52. RPS16 ENSGALG00000026490 287.85 2316.98 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
53. RPL14 ENSGALG00000043379 284.20 2287.60 ribosomal protein L14
54. RPL31 ENSGALG00000016775 278.74 2243.65 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
55. SLC25A6_1 ENSGALG00000016691 273.27 2199.62 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
56. RPL23A ENSGALG00000003966 271.45 2184.98 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
57. RPS29 ENSGALG00000012229 267.81 2155.68 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
58. ALDH1A2 ENSGALG00000004270 262.34 2111.65 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
59. RPL18A 260.52 2097.00 ribosomal protein L18a
60. RPL4 ENSGALG00000007711 258.70 2082.35 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
61. RPS11 ENSGALG00000017299 256.88 2067.70 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
62. HNRNPDL ENSGALG00000023199 253.23 2038.32 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
63. TPT1 ENSGALG00000028872 253.23 2038.32 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
64. HMGN2 HMGN2 249.59 2009.02
65. RPS3A ENSGALG00000010077 249.59 2009.02 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
66. EIF1 ENSGALG00000028517 244.12 1964.99 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
67. RPS12 ENSGALG00000013990 244.12 1964.99 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
68. RPL36 ENSGALG00000000474 242.30 1950.34 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
69. RPL6 ENSGALG00000004818 235.01 1891.66 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
70. RPLP1 ENSGALG00000030878 235.01 1891.66 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
71. RPL3 ENSGALG00000012172 233.19 1877.01 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
72. MEIS2 ENSGALG00000039118 231.37 1862.36 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
73. KPNA2 ENSGALG00000003584 224.08 1803.68 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
74. RPL13 ENSGALG00000006179 224.08 1803.68 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
75. RPL10A ENSGALG00000002644 222.26 1789.03 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
76. ATP5G3 220.44 1774.38 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
77. CALM CALM 220.44 1774.38
78. CDK1 ENSGALG00000003085 220.44 1774.38 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
79. LDHB ENSGALG00000035836 220.44 1774.38 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
80. RPL38 ENSGALG00000001465 216.80 1745.08 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
81. ENSGALG00000002696 ENSGALG00000002696 214.97 1730.35
82. NONO ENSGALG00000005507 214.97 1730.35 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
83. RPS21 ENSGALG00000005338 213.15 1715.70 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
84. ERH ENSGALG00000017384 211.33 1701.05 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
85. H2AFZ ENSGALG00000014023 211.33 1701.05 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
86. RPL35A ENSGALG00000007611, ENSGALG00000041230 211.33 1701.05 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
87. BTF3L4 ENSGALG00000010570 202.22 1627.72 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
88. RPS15 ENSGALG00000015195 202.22 1627.72 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
89. CRHOA CRHOA 198.58 1598.42
90. RPL9 ENSGALG00000000150 198.58 1598.42 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
91. CNN3 ENSGALG00000005597 196.76 1583.77 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
92. HMGB1 ENSGALG00000042875 196.76 1583.77 high mobility group box 1 [Source:NCBI gene;Acc:395724]
93. RPLP2 ENSGALG00000034811 196.76 1583.77 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
94. RPS14 ENSGALG00000004588 191.29 1539.75 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
95. RPS8 ENSGALG00000010124 189.47 1525.10 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
96. EIF4EBP1 ENSGALG00000003205 187.65 1510.45 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
97. ANP32B ENSGALG00000037483 185.83 1495.80 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
98. RPL32 ENSGALG00000027142 185.83 1495.80 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
99. EIF3F ENSGALG00000005326 184.00 1481.07 eukaryotic translation initiation factor 3 subunit F
100. HMGB2 ENSGALG00000010745 176.72 1422.47 high mobility group box 2 [Source:NCBI gene;Acc:396482]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA