Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s43.

Sample reads: 124,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ND5 MT-ND5 4065.92 32727.27
2. MT-ATP6 MT-ATP6 3592.91 28919.93
3. MT-CO3 MT-CO3 3229.99 25998.73
4. EEF1A EEF1A 2069.86 16660.65
5. MT-CO1 MT-CO1 1800.08 14489.14
6. ENSGALG00000018384 ENSGALG00000018384 1763.79 14197.04
7. gga-mir-3527 gga-mir-3527 1761.37 14177.56
8. gga-mir-3533 ENSGALG00000027736 1680.32 13525.18 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. MT-CYB MT-CYB 1674.27 13476.48
10. MT-ND4 MT-ND4 1543.62 12424.85
11. MT-ND1 MT-ND1 1521.85 12249.62
12. GAPDH ENSGALG00000014442 1025.85 8257.24 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. NME2 ENSGALG00000002932 918.19 7390.66 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. MT-ND3 MT-ND3 889.15 7156.92
15. MDK ENSGALG00000008367 879.48 7079.08 midkine [Source:NCBI gene;Acc:423196]
16. PPIA ENSGALG00000028600 802.05 6455.83 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
17. RPL5 ENSGALG00000005922 675.03 5433.43 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. RPL8 ENSGALG00000016232 567.37 4566.86 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. MT-ND2 MT-ND2 523.81 4216.23
20. RPL26 RPL26 464.54 3739.16
21. EIF4G2 ENSGALG00000005587 452.44 3641.77 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
22. RPS3 ENSGALG00000017330 443.97 3573.59 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
23. CIRBP ENSGALG00000030918 434.29 3495.67 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
24. RPL7 ENSGALG00000035252 416.15 3349.66 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
25. TMSB4X ENSGALG00000026383 390.74 3145.13 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
26. ENO1 ENSGALG00000002377 389.53 3135.39 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
27. RPL15 ENSGALG00000011290 385.91 3106.25 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
28. RPL7A ENSGALG00000003197 383.49 3086.78 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
29. RPS27A ENSGALG00000036790 382.28 3077.04 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
30. STMN1 ENSGALG00000001475 372.60 2999.12 stathmin 1 [Source:NCBI gene;Acc:396057]
31. RPL21 ENSGALG00000027035 370.18 2979.64 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
32. RPS7 ENSGALG00000016392 368.97 2969.90 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
33. RPS6 ENSGALG00000015082 364.13 2930.94 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
34. ALDH1A2 ENSGALG00000004270 362.92 2921.20 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
35. H3-IX H3-IX 358.08 2882.25
36. ENSGALG00000018386 ENSGALG00000018386 350.82 2823.81
37. RPL27A ENSGALG00000005948 344.77 2775.11 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
38. RAN ENSGALG00000002569 343.56 2765.37 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
39. ATP6V0C ENSGALG00000009229 331.47 2668.06 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
40. RPL23 ENSGALG00000001634 330.26 2658.32 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
41. RPS20 ENSGALG00000014432 327.84 2638.84 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
42. RPS4 RPS4 325.42 2619.36
43. RPS10 ENSGALG00000002813 318.16 2560.92 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
44. MEIS2 ENSGALG00000039118 315.74 2541.44 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
45. RPS23 ENSGALG00000015617 314.53 2531.70 ribosomal protein S23
46. RPSA 308.48 2483.01 ribosomal protein SA
47. EEF1B2 ENSGALG00000008590 303.64 2444.05 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
48. RPL4 ENSGALG00000007711 302.43 2434.31 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
49. RPS11 ENSGALG00000017299 295.18 2375.95 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
50. RPS24 ENSGALG00000004871 295.18 2375.95 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
51. RPL27 ENSGALG00000002837 290.34 2337.00 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
52. RPL31 ENSGALG00000016775 285.50 2298.04 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
53. HMGN5 ENSGALG00000007131 280.66 2259.08 high mobility group nucleosome binding domain 5, transcript variant X1
54. SLC25A6_1 ENSGALG00000016691 262.51 2112.99 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
55. RPS16 ENSGALG00000026490 260.09 2093.51 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
56. ENSGALG00000028992 ENSGALG00000028992 258.88 2083.77
57. RPL14 ENSGALG00000043379 255.25 2054.55 ribosomal protein L14
58. RPL32 ENSGALG00000027142 255.25 2054.55 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
59. RPS3A ENSGALG00000010077 255.25 2054.55 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
60. H2AFZ ENSGALG00000014023 250.41 2015.59 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
61. RPS15A ENSGALG00000006771 250.41 2015.59 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
62. ANP32B ENSGALG00000037483 249.21 2005.93 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
63. RPL23A ENSGALG00000003966 243.16 1957.24 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
64. HNRNPDL ENSGALG00000023199 240.74 1937.76 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
65. EIF1 ENSGALG00000028517 238.32 1918.28 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
66. HMGB1 ENSGALG00000042875 235.90 1898.80 high mobility group box 1 [Source:NCBI gene;Acc:395724]
67. TPT1 ENSGALG00000028872 231.06 1859.84 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
68. LDHB ENSGALG00000035836 226.22 1820.88 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
69. HMGN2 HMGN2 223.80 1801.40
70. KPNA2 ENSGALG00000003584 218.96 1762.45 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
71. SNRPG ENSGALG00000028409 218.96 1762.45 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
72. RPL13 ENSGALG00000006179 217.75 1752.71 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
73. RPL6 ENSGALG00000004818 217.75 1752.71 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
74. BTF3L4 ENSGALG00000010570 216.54 1742.97 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
75. CDK1 ENSGALG00000003085 216.54 1742.97 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
76. NONO ENSGALG00000005507 214.12 1723.49 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
77. RPL12 ENSGALG00000008806 212.91 1713.75 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
78. RPLP1 ENSGALG00000030878 208.07 1674.79 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
79. RPL18A 205.65 1655.31 ribosomal protein L18a
80. RPL3 ENSGALG00000012172 204.45 1645.65 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
81. CRHOA CRHOA 202.03 1626.17
82. RPL35A ENSGALG00000007611, ENSGALG00000041230 200.82 1616.43 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
83. RPLP2 ENSGALG00000034811 200.82 1616.43 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
84. RPS29 ENSGALG00000012229 200.82 1616.43 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
85. RPS14 ENSGALG00000004588 199.61 1606.69 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
86. EIF3F ENSGALG00000005326 195.98 1577.48 eukaryotic translation initiation factor 3 subunit F
87. HMGB2 ENSGALG00000010745 194.77 1567.74 high mobility group box 2 [Source:NCBI gene;Acc:396482]
88. RPS12 ENSGALG00000013990 194.77 1567.74 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
89. RPL36 ENSGALG00000000474 189.93 1528.78 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
90. RPS8 ENSGALG00000010124 189.93 1528.78 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
91. RPL10A ENSGALG00000002644 188.72 1519.04 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
92. PRDX1 ENSGALG00000010243 186.30 1499.56 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
93. EIF5A2 ENSGALG00000009309 180.25 1450.86 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
94. ERH ENSGALG00000017384 179.04 1441.12 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
95. ATP5G3 177.83 1431.38 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
96. CNN3 ENSGALG00000005597 175.41 1411.90 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
97. ENSGALG00000002696 ENSGALG00000002696 172.99 1392.43
98. FKBP4 ENSGALG00000014331 171.78 1382.69 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
99. CALM CALM 168.15 1353.47
100. SNRPE ENSGALG00000000137 165.73 1333.99 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA