Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s42.

Sample reads: 124,235. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4229.93 34051.34
2. MT-ND5 MT-ND5 3473.17 27959.35
3. MT-ATP6 MT-ATP6 3359.16 27041.56
4. EEF1A EEF1A 2217.41 17850.36
5. MT-CYB MT-CYB 1842.33 14830.93
6. MT-ND4 MT-ND4 1834.07 14764.44
7. MT-CO1 MT-CO1 1805.98 14538.31
8. gga-mir-3527 gga-mir-3527 1756.41 14139.27
9. MT-ND1 MT-ND1 1571.35 12649.52
10. gga-mir-3533 ENSGALG00000027736 1482.13 11931.29 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. ENSGALG00000018384 ENSGALG00000018384 1470.56 11838.15
12. GAPDH ENSGALG00000014442 1290.46 10388.33 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. MT-ND3 MT-ND3 1027.74 8273.41
14. PPIA ENSGALG00000028600 773.28 6224.98 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
15. MDK ENSGALG00000008367 760.07 6118.64 midkine [Source:NCBI gene;Acc:423196]
16. RPL5 ENSGALG00000005922 712.15 5732.88 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. NME2 ENSGALG00000002932 687.36 5533.31 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
18. RPL26 RPL26 622.92 5014.57
19. RPL8 ENSGALG00000016232 588.22 4735.23 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. RPL15 ENSGALG00000011290 538.65 4336.18 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. CIRBP ENSGALG00000030918 513.87 4136.70 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
22. STMN1 ENSGALG00000001475 482.48 3884.01 stathmin 1 [Source:NCBI gene;Acc:396057]
23. RPS3 ENSGALG00000017330 479.17 3857.36 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
24. RPL27A ENSGALG00000005948 467.61 3764.31 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
25. RPL7 ENSGALG00000035252 451.08 3631.24 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
26. RPL7A ENSGALG00000003197 449.43 3617.95 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
27. EIF4G2 ENSGALG00000005587 437.86 3524.81 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
28. ALDH1A2 ENSGALG00000004270 427.95 3445.04 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
29. RPS6 ENSGALG00000015082 424.65 3418.47 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
30. ENO1 ENSGALG00000002377 413.08 3325.33 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
31. TMSB4X ENSGALG00000026383 409.77 3298.69 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
32. RPS23 ENSGALG00000015617 404.82 3258.84 ribosomal protein S23
33. RPS7 ENSGALG00000016392 401.51 3232.19 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
34. RPL21 ENSGALG00000027035 398.21 3205.63 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
35. RPS4 RPS4 394.90 3178.98
36. RPS10 ENSGALG00000002813 391.60 3152.42 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
37. MT-ND2 MT-ND2 365.16 2939.57
38. RPS27A ENSGALG00000036790 358.55 2886.36 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
39. RPL31 ENSGALG00000016775 353.60 2846.51 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
40. RPS20 ENSGALG00000014432 343.68 2766.66 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
41. RPL23 ENSGALG00000001634 337.07 2713.45 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
42. RPS24 ENSGALG00000004871 335.42 2700.16 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
43. RAN ENSGALG00000002569 332.12 2673.60 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
44. RPSA 328.81 2646.95 ribosomal protein SA
45. RPL27 ENSGALG00000002837 322.20 2593.74 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
46. H3-IX H3-IX 312.29 2513.96
47. RPL4 ENSGALG00000007711 310.64 2500.68 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
48. RPS16 ENSGALG00000026490 310.64 2500.68 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
49. RPS11 ENSGALG00000017299 308.98 2487.32 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
50. EEF1B2 ENSGALG00000008590 307.33 2474.04 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
51. RPL18A 304.03 2447.47 ribosomal protein L18a
52. RPL32 ENSGALG00000027142 304.03 2447.47 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
53. ENSGALG00000018386 ENSGALG00000018386 302.37 2434.11
54. RPL14 ENSGALG00000043379 300.72 2420.82 ribosomal protein L14
55. SNRPG ENSGALG00000028409 297.42 2394.26 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
56. MEIS2 ENSGALG00000039118 295.76 2380.90 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
57. RPS15A ENSGALG00000006771 292.46 2354.33 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
58. HMGN5 ENSGALG00000007131 289.16 2327.77 high mobility group nucleosome binding domain 5, transcript variant X1
59. ENSGALG00000028992 ENSGALG00000028992 277.59 2234.63
60. RPL23A ENSGALG00000003966 277.59 2234.63 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
61. RPS3A ENSGALG00000010077 277.59 2234.63 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
62. ATP6V0C ENSGALG00000009229 272.63 2194.70 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
63. RPL13 ENSGALG00000006179 266.02 2141.49 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
64. SLC25A6_1 ENSGALG00000016691 264.37 2128.20 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
65. H2AFZ ENSGALG00000014023 252.80 2035.06 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
66. RPS12 ENSGALG00000013990 249.50 2008.50 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
67. RPLP1 ENSGALG00000030878 247.85 1995.22 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
68. RPL10A ENSGALG00000002644 246.20 1981.93 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
69. RPL6 ENSGALG00000004818 244.54 1968.57 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
70. PRDX1 ENSGALG00000010243 237.93 1915.36 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
71. RPL36 ENSGALG00000000474 236.28 1902.08 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
72. BTF3L4 ENSGALG00000010570 234.63 1888.79 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
73. CNN3 ENSGALG00000005597 234.63 1888.79 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
74. RPS29 ENSGALG00000012229 232.98 1875.51 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
75. RPS14 ENSGALG00000004588 228.02 1835.58 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
76. HNRNPDL ENSGALG00000023199 223.06 1795.65 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
77. ENSGALG00000002696 ENSGALG00000002696 221.41 1782.37
78. CRHOA CRHOA 209.84 1689.23
79. SNRPE ENSGALG00000000137 209.84 1689.23 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
80. ATP5G3 208.19 1675.95 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
81. CDK1 ENSGALG00000003085 206.54 1662.67 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
82. RPL3 ENSGALG00000012172 206.54 1662.67 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
83. EIF3F ENSGALG00000005326 199.93 1609.46 eukaryotic translation initiation factor 3 subunit F
84. HMGB1 ENSGALG00000042875 199.93 1609.46 high mobility group box 1 [Source:NCBI gene;Acc:395724]
85. EIF1 ENSGALG00000028517 196.63 1582.89 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
86. HMGN2 HMGN2 193.32 1556.24
87. RPS8 ENSGALG00000010124 193.32 1556.24 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
88. RPL12 ENSGALG00000008806 190.02 1529.68 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
89. YWHAZ ENSGALG00000031387 190.02 1529.68 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
90. LDHB ENSGALG00000035836 188.36 1516.32 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
91. RPL38 ENSGALG00000001465 186.71 1503.03 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
92. ANP32B ENSGALG00000037483 185.06 1489.75 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
93. CCT6 CCT6 183.41 1476.47
94. RPL9 ENSGALG00000000150 183.41 1476.47 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
95. RPLP2 ENSGALG00000034811 183.41 1476.47 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
96. RPS15 ENSGALG00000015195 183.41 1476.47 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
97. ERH ENSGALG00000017384 181.75 1463.10 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
98. KPNA2 ENSGALG00000003584 181.75 1463.10 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
99. RPL35A ENSGALG00000007611, ENSGALG00000041230 175.15 1409.97 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
100. TPT1 ENSGALG00000028872 175.15 1409.97 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA