Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s4.

Sample reads: 124,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. ENSGALG00000018384 ENSGALG00000018384 8254.98 66441.71
2. MT-ND5 MT-ND5 3219.37 25911.68
3. MT-ATP6 MT-ATP6 2717.04 21868.59
4. MT-CO3 MT-CO3 2678.58 21559.04
5. ENSGALG00000018386 ENSGALG00000018386 1953.16 15720.36
6. EEF1A EEF1A 1676.23 13491.44
7. MT-CO1 MT-CO1 1513.91 12184.98
8. MT-CYB MT-CYB 1408.52 11336.73
9. GAPDH ENSGALG00000014442 1303.90 10494.68 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. MT-ND4 MT-ND4 1287.75 10364.69
11. gga-mir-3527 gga-mir-3527 1255.44 10104.64
12. MT-ND2 MT-ND2 1217.75 9801.28
13. MT-ND1 MT-ND1 1210.82 9745.50
14. gga-mir-3533 ENSGALG00000027736 1164.67 9374.06 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
15. NME2 ENSGALG00000002932 844.65 6798.32 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. PPIA ENSGALG00000028600 768.50 6185.41 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
17. MT-ND3 MT-ND3 606.18 4878.95
18. TMSB4X ENSGALG00000026383 566.18 4557.00 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
19. RPL8 ENSGALG00000016232 555.41 4470.32 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. RPL5 ENSGALG00000005922 513.87 4135.98 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
21. CIRBP ENSGALG00000030918 456.94 3677.76 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
22. RPL15 ENSGALG00000011290 427.71 3442.50 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
23. RPL26 RPL26 427.71 3442.50
24. RPL7A ENSGALG00000003197 411.56 3312.52 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
25. EIF4G2 ENSGALG00000005587 406.94 3275.33 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
26. HMGN5 ENSGALG00000007131 401.56 3232.03 high mobility group nucleosome binding domain 5, transcript variant X1
27. ENO1 ENSGALG00000002377 400.79 3225.83 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
28. RPS7 ENSGALG00000016392 395.40 3182.45 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
29. RPS3 ENSGALG00000017330 386.17 3108.16 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
30. RPS6 ENSGALG00000015082 361.55 2910.00 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
31. RPL7 ENSGALG00000035252 356.17 2866.70 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
32. STMN1 ENSGALG00000001475 353.86 2848.11 stathmin 1 [Source:NCBI gene;Acc:396057]
33. RPL21 ENSGALG00000027035 340.78 2742.83 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
34. RPL27A ENSGALG00000005948 338.48 2724.32 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
35. CRABP-I ENSGALG00000003193 332.32 2674.74 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
36. RAN ENSGALG00000002569 332.32 2674.74 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
37. LDHB ENSGALG00000035836 325.40 2619.04 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
38. RPL27 ENSGALG00000002837 325.40 2619.04 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
39. RPS20 ENSGALG00000014432 312.32 2513.76 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
40. RPL4 ENSGALG00000007711 303.09 2439.47 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
41. RPS10 ENSGALG00000002813 299.24 2408.49 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
42. ATP6V0C ENSGALG00000009229 298.47 2402.29 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
43. RPS27A ENSGALG00000036790 298.47 2402.29 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
44. H3-IX H3-IX 297.71 2396.17
45. RPS23 ENSGALG00000015617 296.94 2389.98 ribosomal protein S23
46. RPS4 RPS4 292.32 2352.79
47. MDK ENSGALG00000008367 280.78 2259.91 midkine [Source:NCBI gene;Acc:423196]
48. EIF1 ENSGALG00000028517 278.47 2241.32 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
49. RPS11 ENSGALG00000017299 268.47 2160.83 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
50. SNRPG ENSGALG00000028409 267.70 2154.63 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
51. EEF1B2 ENSGALG00000008590 263.86 2123.73 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
52. RPL14 ENSGALG00000043379 262.32 2111.33 ribosomal protein L14
53. RPS16 ENSGALG00000026490 261.55 2105.13 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
54. H2AFZ ENSGALG00000014023 256.17 2061.83 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
55. RPS24 ENSGALG00000004871 253.86 2043.24 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
56. RPL31 ENSGALG00000016775 253.09 2037.04 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
57. ENSGALG00000028992 ENSGALG00000028992 248.47 1999.86
58. RPSA 247.70 1993.66 ribosomal protein SA
59. RPL23 ENSGALG00000001634 244.63 1968.95 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
60. SLC25A6_1 ENSGALG00000016691 240.78 1937.96 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
61. ANP32B ENSGALG00000037483 237.70 1913.17 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
62. HMGN2 HMGN2 236.93 1906.97
63. RPL32 ENSGALG00000027142 236.93 1906.97 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
64. RPS12 ENSGALG00000013990 235.40 1894.66 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
65. ATP5G3 233.86 1882.26 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
66. MIF ENSGALG00000006326 232.32 1869.87 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
67. NONO ENSGALG00000005507 232.32 1869.87 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
68. RPLP1 ENSGALG00000030878 230.01 1851.28 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
69. HNRNPDL ENSGALG00000023199 224.63 1807.98 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
70. RPL18A 224.63 1807.98 ribosomal protein L18a
71. RPS8 ENSGALG00000010124 220.78 1776.99 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
72. MT-ATP8 MT-ATP8 217.70 1752.20
73. TPT1 ENSGALG00000028872 215.39 1733.61 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
74. ENSGALG00000002696 ENSGALG00000002696 214.62 1727.41
75. CALM CALM 213.86 1721.29
76. RPL6 ENSGALG00000004818 210.01 1690.30 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
77. RPL3 ENSGALG00000012172 206.93 1665.51 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
78. RPLP2 ENSGALG00000034811 203.09 1634.61 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
79. HMGB1 ENSGALG00000042875 200.78 1616.01 high mobility group box 1 [Source:NCBI gene;Acc:395724]
80. RPS15A ENSGALG00000006771 199.24 1603.62 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
81. ERH ENSGALG00000017384 196.93 1585.03 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
82. NUCKS1 ENSGALG00000000708 195.39 1572.63 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
83. RPL13 ENSGALG00000006179 193.09 1554.12 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
84. RPL23A ENSGALG00000003966 188.47 1516.94 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
85. RPL35A ENSGALG00000007611, ENSGALG00000041230 187.70 1510.74 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
86. RPL10A ENSGALG00000002644 180.78 1455.04 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
87. BTF3L4 ENSGALG00000010570 179.24 1442.65 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
88. RPS29 ENSGALG00000012229 177.70 1430.25 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
89. RPS3A ENSGALG00000010077 177.70 1430.25 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
90. HMGB2 ENSGALG00000010745 175.39 1411.66 high mobility group box 2 [Source:NCBI gene;Acc:396482]
91. RPS14 ENSGALG00000004588 175.39 1411.66 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
92. RPS15 ENSGALG00000015195 173.85 1399.26 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
93. SNRPE ENSGALG00000000137 173.08 1393.07 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
94. EIF5A2 ENSGALG00000009309 172.32 1386.95 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
95. PGK1 ENSGALG00000007936 170.01 1368.36 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
96. RPL12 ENSGALG00000008806 170.01 1368.36 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
97. FKBP4 ENSGALG00000014331 163.85 1318.78 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
98. IGF2BP3 ENSGALG00000010961 158.47 1275.47 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
99. CRHOA CRHOA 157.70 1269.28
100. TCEB3 ENSGALG00000034625 157.70 1269.28 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA