Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s39.

Sample reads: 124,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 6058.03 48762.59
2. MT-ND5 MT-ND5 4897.92 39424.58
3. MT-CO3 MT-CO3 3959.70 31872.61
4. gga-mir-3527 gga-mir-3527 2403.76 19348.46
5. MT-CYB MT-CYB 2298.30 18499.59
6. MT-ND1 MT-ND1 2183.25 17573.52
7. MT-ND4 MT-ND4 1935.34 15578.03
8. gga-mir-3533 ENSGALG00000027736 1918.90 15445.70 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. EEF1A EEF1A 1773.72 14277.11
10. MT-CO1 MT-CO1 1753.17 14111.70
11. ENSGALG00000018384 ENSGALG00000018384 1228.59 9889.23
12. GAPDH ENSGALG00000014442 962.87 7750.38 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. MT-ND3 MT-ND3 912.20 7342.52
14. MT-ND2 MT-ND2 846.45 6813.29
15. PPIA ENSGALG00000028600 821.80 6614.87 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. NME2 ENSGALG00000002932 780.71 6284.13 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
17. MDK ENSGALG00000008367 673.88 5424.23 midkine [Source:NCBI gene;Acc:423196]
18. RPL15 ENSGALG00000011290 482.12 3880.70 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. RPL5 ENSGALG00000005922 461.58 3715.37 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
20. RPL8 ENSGALG00000016232 439.66 3538.93 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. RPS3 ENSGALG00000017330 435.55 3505.85 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
22. RPS7 ENSGALG00000016392 421.86 3395.66 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
23. STMN1 ENSGALG00000001475 415.01 3340.52 stathmin 1 [Source:NCBI gene;Acc:396057]
24. EIF4G2 ENSGALG00000005587 412.27 3318.46 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
25. RPL7 ENSGALG00000035252 412.27 3318.46 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
26. RPL27A ENSGALG00000005948 408.16 3285.38 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
27. RPL26 RPL26 404.05 3252.30
28. CIRBP ENSGALG00000030918 387.62 3120.05 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
29. RPL21 ENSGALG00000027035 375.29 3020.80 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
30. RPL7A ENSGALG00000003197 361.59 2910.53 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. RPL31 ENSGALG00000016775 352.00 2833.34 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
32. ALDH1A2 ENSGALG00000004270 350.63 2822.31 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
33. TMSB4X ENSGALG00000026383 346.53 2789.31 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
34. RPS15A ENSGALG00000006771 317.76 2557.73 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
35. RPS24 ENSGALG00000004871 316.39 2546.70 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
36. RPS23 ENSGALG00000015617 312.28 2513.62 ribosomal protein S23
37. ENO1 ENSGALG00000002377 310.91 2502.59 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
38. MEIS2 ENSGALG00000039118 305.44 2458.56 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
39. RPL18A 305.44 2458.56 ribosomal protein L18a
40. RPS10 ENSGALG00000002813 304.07 2447.53 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
41. HMGN5 ENSGALG00000007131 298.59 2403.43 high mobility group nucleosome binding domain 5, transcript variant X1
42. ATP6V0C ENSGALG00000009229 297.22 2392.40 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
43. RPL27 ENSGALG00000002837 297.22 2392.40 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
44. RAN ENSGALG00000002569 295.85 2381.37 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
45. RPS4 RPS4 289.00 2326.23
46. RPS6 ENSGALG00000015082 287.63 2315.21 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
47. RPS16 ENSGALG00000026490 286.26 2304.18 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
48. H3-IX H3-IX 280.78 2260.07
49. RPS11 ENSGALG00000017299 280.78 2260.07 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
50. RPSA 272.56 2193.90 ribosomal protein SA
51. RPL6 ENSGALG00000004818 265.71 2138.77 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
52. RPL4 ENSGALG00000007711 264.35 2127.82 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
53. EEF1B2 ENSGALG00000008590 261.61 2105.76 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
54. RPS20 ENSGALG00000014432 261.61 2105.76 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
55. RPS27A ENSGALG00000036790 261.61 2105.76 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
56. RPL32 ENSGALG00000027142 256.13 2061.65 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
57. HMGN2 HMGN2 254.76 2050.63
58. RPL23A ENSGALG00000003966 254.76 2050.63 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
59. RPL23 ENSGALG00000001634 249.28 2006.52 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
60. SLC25A6_1 ENSGALG00000016691 243.80 1962.41 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
61. ANP32B ENSGALG00000037483 232.84 1874.19 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
62. RPS15 ENSGALG00000015195 231.47 1863.16 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
63. ENSGALG00000028992 ENSGALG00000028992 228.73 1841.10
64. EIF1 ENSGALG00000028517 221.89 1786.05 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
65. SNRPG ENSGALG00000028409 220.52 1775.02 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
66. TPT1 ENSGALG00000028872 219.15 1763.99 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
67. RPS3A ENSGALG00000010077 217.78 1752.97 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
68. RPS29 ENSGALG00000012229 213.67 1719.88 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
69. ATP5G3 212.30 1708.86 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
70. BTF3L4 ENSGALG00000010570 212.30 1708.86 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
71. RPL13 ENSGALG00000006179 210.93 1697.83 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
72. RPL38 ENSGALG00000001465 209.56 1686.80 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
73. CRHOA CRHOA 202.71 1631.66
74. LDHB ENSGALG00000035836 201.34 1620.64 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
75. RPL14 ENSGALG00000043379 201.34 1620.64 ribosomal protein L14
76. RPL36 ENSGALG00000000474 199.97 1609.61 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
77. H2AFZ ENSGALG00000014023 198.60 1598.58 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
78. NONO ENSGALG00000005507 197.23 1587.55 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
79. ENSGALG00000018386 ENSGALG00000018386 195.86 1576.53
80. HNRNPDL ENSGALG00000023199 194.49 1565.50 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
81. RPLP1 ENSGALG00000030878 194.49 1565.50 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
82. CNN3 ENSGALG00000005597 184.90 1488.31 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
83. YWHAZ ENSGALG00000031387 184.90 1488.31 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
84. RPL12 ENSGALG00000008806 183.54 1477.36 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
85. RPL10A ENSGALG00000002644 182.17 1466.33 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
86. RPS12 ENSGALG00000013990 180.80 1455.30 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
87. EIF3F ENSGALG00000005326 179.43 1444.28 eukaryotic translation initiation factor 3 subunit F
88. PRDX1 ENSGALG00000010243 178.06 1433.25 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
89. HMGB1 ENSGALG00000042875 176.69 1422.22 high mobility group box 1 [Source:NCBI gene;Acc:395724]
90. CDK1 ENSGALG00000003085 173.95 1400.17 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
91. KPNA2 ENSGALG00000003584 172.58 1389.14 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
92. RPL9 ENSGALG00000000150 172.58 1389.14 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
93. RPL3 ENSGALG00000012172 171.21 1378.11 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
94. EIF4EBP1 ENSGALG00000003205 169.84 1367.08 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
95. ENSGALG00000002696 ENSGALG00000002696 168.47 1356.06
96. HMGB2 ENSGALG00000010745 164.36 1322.97 high mobility group box 2 [Source:NCBI gene;Acc:396482]
97. NUCKS1 ENSGALG00000000708 164.36 1322.97 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
98. IGF2BP3 ENSGALG00000010961 154.77 1245.78 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
99. RPS8 ENSGALG00000010124 153.40 1234.75 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
100. RPL35A ENSGALG00000007611, ENSGALG00000041230 152.03 1223.73 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA