Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s38.

Sample reads: 124,235. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ND5 MT-ND5 4419.23 35574.74
2. ENSGALG00000018384 ENSGALG00000018384 4111.02 33093.65
3. MT-ATP6 MT-ATP6 3673.20 29569.21
4. MT-CO3 MT-CO3 3583.11 28843.98
5. gga-mir-3533 ENSGALG00000027736 2189.07 17621.98 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. MT-ND1 MT-ND1 1863.47 15000.91
7. MT-CYB MT-CYB 1844.50 14848.20
8. EEF1A EEF1A 1798.67 14479.27
9. gga-mir-3527 gga-mir-3527 1675.39 13486.87
10. MT-CO1 MT-CO1 1659.58 13359.60
11. MT-ND4 MT-ND4 1582.13 12736.12
12. GAPDH ENSGALG00000014442 1096.90 8830.03 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. MT-ND2 MT-ND2 867.72 6985.13
14. MT-ND3 MT-ND3 817.15 6578.05
15. PPIA ENSGALG00000028600 810.82 6527.09 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. NME2 ENSGALG00000002932 809.24 6514.37 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
17. RPL8 ENSGALG00000016232 586.39 4720.43 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
18. MDK ENSGALG00000008367 573.74 4618.60 midkine [Source:NCBI gene;Acc:423196]
19. RPL5 ENSGALG00000005922 529.49 4262.39 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
20. ENSGALG00000018386 ENSGALG00000018386 496.29 3995.13
21. CIRBP ENSGALG00000030918 474.17 3817.06 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
22. RPL7 ENSGALG00000035252 458.36 3689.79 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
23. RPL15 ENSGALG00000011290 455.20 3664.35 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
24. EIF4G2 ENSGALG00000005587 448.88 3613.48 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
25. TMSB4X ENSGALG00000026383 447.30 3600.76 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
26. STMN1 ENSGALG00000001475 436.23 3511.65 stathmin 1 [Source:NCBI gene;Acc:396057]
27. RPL26 RPL26 418.85 3371.74
28. RPL27A ENSGALG00000005948 415.69 3346.30 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
29. ALDH1A2 ENSGALG00000004270 399.88 3219.03 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
30. RPL21 ENSGALG00000027035 391.98 3155.43 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
31. RPS3 ENSGALG00000017330 384.07 3091.76 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
32. RPS7 ENSGALG00000016392 363.53 2926.41 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
33. RPS4 RPS4 342.98 2760.98
34. RPS10 ENSGALG00000002813 335.08 2697.39 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
35. RPS11 ENSGALG00000017299 328.75 2646.43 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
36. RPS20 ENSGALG00000014432 324.01 2608.28 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
37. HMGN5 ENSGALG00000007131 309.79 2493.81 high mobility group nucleosome binding domain 5, transcript variant X1
38. H3-IX H3-IX 308.21 2481.09
39. RPS27A ENSGALG00000036790 306.63 2468.37 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
40. RPS6 ENSGALG00000015082 305.05 2455.65 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
41. ENO1 ENSGALG00000002377 301.89 2430.21 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
42. EIF1 ENSGALG00000028517 298.72 2404.69 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
43. RPL31 ENSGALG00000016775 297.14 2391.97 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
44. RAN ENSGALG00000002569 292.40 2353.82 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
45. RPSA 292.40 2353.82 ribosomal protein SA
46. ENSGALG00000028992 ENSGALG00000028992 287.66 2315.66
47. RPS24 ENSGALG00000004871 278.18 2239.35 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
48. ATP5G3 273.44 2201.19 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
49. CRHOA CRHOA 270.27 2175.67
50. RPS23 ENSGALG00000015617 270.27 2175.67 ribosomal protein S23
51. RPS15A ENSGALG00000006771 268.69 2162.95 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
52. RPL4 ENSGALG00000007711 263.95 2124.79 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
53. EEF1B2 ENSGALG00000008590 260.79 2099.36 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
54. RPL27 ENSGALG00000002837 260.79 2099.36 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
55. RPL7A ENSGALG00000003197 260.79 2099.36 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
56. RPS16 ENSGALG00000026490 260.79 2099.36 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
57. SLC25A6_1 ENSGALG00000016691 260.79 2099.36 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
58. HMGN2 HMGN2 257.63 2073.92
59. RPL32 ENSGALG00000027142 248.15 1997.60 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
60. RPL13 ENSGALG00000006179 244.99 1972.17 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
61. MEIS2 ENSGALG00000039118 233.92 1883.05 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
62. RPL14 ENSGALG00000043379 232.34 1870.33 ribosomal protein L14
63. RPL18A 232.34 1870.33 ribosomal protein L18a
64. ATP6V0C ENSGALG00000009229 227.60 1832.18 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
65. RPLP1 ENSGALG00000030878 227.60 1832.18 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
66. RPL3 ENSGALG00000012172 226.02 1819.46 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
67. KPNA2 ENSGALG00000003584 224.44 1806.74 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
68. TPT1 ENSGALG00000028872 222.86 1794.02 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
69. H2AFZ ENSGALG00000014023 221.28 1781.30 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
70. RPL23A ENSGALG00000003966 219.70 1768.58 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
71. BTF3L4 ENSGALG00000010570 211.79 1704.91 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
72. CALM CALM 211.79 1704.91
73. RPS12 ENSGALG00000013990 211.79 1704.91 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
74. NONO ENSGALG00000005507 205.47 1654.03 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
75. RPS3A ENSGALG00000010077 205.47 1654.03 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
76. CDK1 ENSGALG00000003085 200.73 1615.87 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
77. RPS14 ENSGALG00000004588 199.15 1603.15 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
78. HMGB1 ENSGALG00000042875 197.57 1590.44 high mobility group box 1 [Source:NCBI gene;Acc:395724]
79. RPL10A ENSGALG00000002644 197.57 1590.44 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
80. RPS29 ENSGALG00000012229 197.57 1590.44 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
81. ENSGALG00000002696 ENSGALG00000002696 195.99 1577.72
82. RPLP2 ENSGALG00000034811 195.99 1577.72 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
83. PRDX1 ENSGALG00000010243 194.41 1565.00 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
84. HMGB2 ENSGALG00000010745 192.83 1552.28 high mobility group box 2 [Source:NCBI gene;Acc:396482]
85. CNN3 ENSGALG00000005597 188.09 1514.12 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
86. RPL6 ENSGALG00000004818 186.51 1501.40 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
87. HNRNPDL ENSGALG00000023199 181.76 1463.17 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
88. SNRPG ENSGALG00000028409 180.18 1450.45 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
89. EIF4EBP1 ENSGALG00000003205 177.02 1425.01 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
90. EIF3F ENSGALG00000005326 172.28 1386.85 eukaryotic translation initiation factor 3 subunit F
91. RPL38 ENSGALG00000001465 172.28 1386.85 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
92. TCEB3 ENSGALG00000034625 172.28 1386.85 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
93. LDHB ENSGALG00000035836 169.12 1361.41 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
94. RPL9 ENSGALG00000000150 167.54 1348.69 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
95. RPL36 ENSGALG00000000474 165.96 1335.98 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
96. EEF1D 164.38 1323.26 eukaryotic translation elongation factor 1 delta, transcript variant X13
97. HSPA8 ENSGALG00000006512 162.80 1310.54 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
98. RPS8 ENSGALG00000010124 162.80 1310.54 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
99. RPL35A ENSGALG00000007611, ENSGALG00000041230 161.22 1297.82 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
100. RPS15 ENSGALG00000015195 161.22 1297.82 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA