Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s36.

Sample reads: 124,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. ENSGALG00000018384 ENSGALG00000018384 4973.39 40032.97
2. MT-CO3 MT-CO3 3606.84 29033.02
3. MT-ATP6 MT-ATP6 3011.24 24238.77
4. MT-ND5 MT-ND5 2603.09 20953.40
5. EEF1A EEF1A 2128.43 17132.65
6. gga-mir-3527 gga-mir-3527 2022.61 16280.86
7. MT-CYB MT-CYB 1880.51 15137.04
8. MT-ND4 MT-ND4 1823.07 14674.68
9. gga-mir-3533 ENSGALG00000027736 1789.81 14406.95 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. MT-CO1 MT-CO1 1744.46 14041.91
11. GAPDH ENSGALG00000014442 1375.62 11072.96 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ND1 MT-ND1 1088.40 8761.00
13. MT-ND3 MT-ND3 1058.17 8517.67
14. NME2 ENSGALG00000002932 879.79 7081.81 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. ENSGALG00000018386 ENSGALG00000018386 876.77 7057.50
16. RPL5 ENSGALG00000005922 716.53 5767.66 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. MDK ENSGALG00000008367 698.39 5621.64 midkine [Source:NCBI gene;Acc:423196]
18. MT-ND2 MT-ND2 625.83 5037.58
19. PPIA ENSGALG00000028600 604.67 4867.25 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
20. RPL26 RPL26 589.55 4745.54
21. RPL8 ENSGALG00000016232 553.27 4453.51 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
22. RPS3 ENSGALG00000017330 532.11 4283.18 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
23. TMSB4X ENSGALG00000026383 523.04 4210.18 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
24. RPL7 ENSGALG00000035252 495.83 3991.15 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
25. RPL7A ENSGALG00000003197 471.64 3796.43 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
26. RPL27A ENSGALG00000005948 447.45 3601.72 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
27. RPS7 ENSGALG00000016392 420.24 3382.69 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
28. ENO1 ENSGALG00000002377 417.22 3358.38 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
29. RPS4 RPS4 411.17 3309.69
30. EIF4G2 ENSGALG00000005587 405.13 3261.07 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
31. RAN ENSGALG00000002569 405.13 3261.07 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
32. RPL21 ENSGALG00000027035 405.13 3261.07 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
33. STMN1 ENSGALG00000001475 405.13 3261.07 stathmin 1 [Source:NCBI gene;Acc:396057]
34. RPL15 ENSGALG00000011290 399.08 3212.37 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
35. CIRBP ENSGALG00000030918 393.03 3163.67 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
36. RPS23 ENSGALG00000015617 383.96 3090.66 ribosomal protein S23
37. RPS15A ENSGALG00000006771 380.94 3066.35 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
38. RPS6 ENSGALG00000015082 380.94 3066.35 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
39. RPL31 ENSGALG00000016775 359.78 2896.02 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
40. RPS11 ENSGALG00000017299 353.73 2847.33 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
41. H3-IX H3-IX 347.68 2798.63
42. RPS10 ENSGALG00000002813 347.68 2798.63 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
43. SLC25A6_1 ENSGALG00000016691 341.64 2750.01 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
44. RPL27 ENSGALG00000002837 338.61 2725.62 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
45. CRHOA CRHOA 320.47 2579.60
46. RPS15 ENSGALG00000015195 311.40 2506.59 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
47. RPS20 ENSGALG00000014432 311.40 2506.59 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
48. RPSA 311.40 2506.59 ribosomal protein SA
49. EEF1B2 ENSGALG00000008590 302.33 2433.58 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
50. RPL23 ENSGALG00000001634 302.33 2433.58 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
51. RPS16 ENSGALG00000026490 302.33 2433.58 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
52. RPS27A ENSGALG00000036790 299.31 2409.28 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
53. RPL14 ENSGALG00000043379 284.19 2287.57 ribosomal protein L14
54. RPL23A ENSGALG00000003966 278.15 2238.95 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
55. ENSGALG00000028992 ENSGALG00000028992 272.10 2190.25
56. HMGN5 ENSGALG00000007131 272.10 2190.25 high mobility group nucleosome binding domain 5, transcript variant X1
57. H2AFZ ENSGALG00000014023 269.08 2165.94 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
58. RPL13 ENSGALG00000006179 269.08 2165.94 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
59. RPL32 ENSGALG00000027142 269.08 2165.94 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
60. RPS3A ENSGALG00000010077 269.08 2165.94 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
61. RPS24 ENSGALG00000004871 266.05 2141.55 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
62. MEIS2 ENSGALG00000039118 253.96 2044.23 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
63. RPL4 ENSGALG00000007711 253.96 2044.23 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
64. ATP5G3 250.94 2019.92 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
65. RPL6 ENSGALG00000004818 250.94 2019.92 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
66. RPS12 ENSGALG00000013990 250.94 2019.92 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
67. ALDH1A2 ENSGALG00000004270 247.91 1995.53 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
68. RPS29 ENSGALG00000012229 244.89 1971.23 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
69. RPLP1 ENSGALG00000030878 232.80 1873.91 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
70. ENSGALG00000002696 ENSGALG00000002696 223.73 1800.90
71. CNN3 ENSGALG00000005597 217.68 1752.20 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
72. EIF1 ENSGALG00000028517 217.68 1752.20 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
73. PRDX1 ENSGALG00000010243 214.66 1727.89 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
74. EIF4EBP1 ENSGALG00000003205 211.63 1703.50 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
75. HNRNPDL ENSGALG00000023199 211.63 1703.50 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
76. LUM ENSGALG00000011271 208.61 1679.19 lumican [Source:NCBI gene;Acc:417891]
77. RPL18A 208.61 1679.19 ribosomal protein L18a
78. RPS14 ENSGALG00000004588 205.59 1654.88 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
79. ATP6V0C ENSGALG00000009229 202.56 1630.49 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
80. RPL9 ENSGALG00000000150 202.56 1630.49 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
81. TPT1 ENSGALG00000028872 199.54 1606.18 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
82. CALM CALM 196.52 1581.87
83. RPL10A ENSGALG00000002644 196.52 1581.87 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
84. YWHAZ ENSGALG00000031387 193.49 1557.48 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
85. BTF3L4 ENSGALG00000010570 190.47 1533.18 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
86. RPL36 ENSGALG00000000474 190.47 1533.18 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
87. RPL3 ENSGALG00000012172 184.42 1484.48 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
88. RPL38 ENSGALG00000001465 181.40 1460.17 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
89. RPS8 ENSGALG00000010124 181.40 1460.17 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
90. HMGN2 HMGN2 175.35 1411.47
91. RPL24 ENSGALG00000015339 166.28 1338.46 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
92. LDHB ENSGALG00000035836 163.26 1314.15 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
93. RPLP2 ENSGALG00000034811 163.26 1314.15 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
94. CDK1 ENSGALG00000003085 160.24 1289.84 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
95. KPNA2 ENSGALG00000003584 160.24 1289.84 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
96. RPS13 ENSGALG00000006096 154.19 1241.14 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
97. RPL35 ENSGALG00000035677 151.17 1216.83 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
98. RPL35A ENSGALG00000007611, ENSGALG00000041230 151.17 1216.83 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
99. COL1A2 ENSGALG00000009641 148.14 1192.44 collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]
100. DDX5 ENSGALG00000003532 148.14 1192.44 DEAD-box helicase 5 [Source:NCBI gene;Acc:395629]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA