Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s35.

Sample reads: 124,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ND5 MT-ND5 3902.40 31415.18
2. MT-ATP6 MT-ATP6 3821.61 30764.80
3. MT-CO3 MT-CO3 3753.86 30219.40
4. gga-mir-3533 ENSGALG00000027736 2777.93 22362.95 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
5. MT-CYB MT-CYB 2358.38 18985.48
6. EEF1A EEF1A 2013.09 16205.82
7. gga-mir-3527 gga-mir-3527 1876.28 15104.47
8. MT-CO1 MT-CO1 1639.14 13195.44
9. MT-ND4 MT-ND4 1557.05 12534.59
10. MT-ND1 MT-ND1 1521.87 12251.39
11. ENSGALG00000018384 ENSGALG00000018384 1372.03 11045.14
12. GAPDH ENSGALG00000014442 1150.52 9261.94 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. MT-ND3 MT-ND3 849.54 6838.98
14. MDK ENSGALG00000008367 816.96 6576.71 midkine [Source:NCBI gene;Acc:423196]
15. NME2 ENSGALG00000002932 762.24 6136.20 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. PPIA ENSGALG00000028600 699.70 5632.74 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
17. TMSB4X ENSGALG00000026383 573.31 4615.27 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
18. RPL5 ENSGALG00000005922 562.88 4531.31 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
19. RPL8 ENSGALG00000016232 543.34 4374.01 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. CIRBP ENSGALG00000030918 482.10 3881.01 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
21. RPL15 ENSGALG00000011290 470.37 3786.58 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPL26 RPL26 452.13 3639.75
23. STMN1 ENSGALG00000001475 441.71 3555.86 stathmin 1 [Source:NCBI gene;Acc:396057]
24. RPS7 ENSGALG00000016392 423.47 3409.03 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
25. RPL27A ENSGALG00000005948 420.86 3388.02 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. RPL23 ENSGALG00000001634 418.25 3367.00 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
27. RPL7A ENSGALG00000003197 403.92 3251.64 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
28. RPL21 ENSGALG00000027035 393.50 3167.76 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
29. RPL31 ENSGALG00000016775 392.19 3157.22 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
30. RPL7 ENSGALG00000035252 392.19 3157.22 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
31. RPS3 ENSGALG00000017330 392.19 3157.22 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
32. EIF4G2 ENSGALG00000005587 390.89 3146.75 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
33. ATP6V0C ENSGALG00000009229 379.16 3052.32 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
34. H3-IX H3-IX 373.95 3010.38
35. RPS23 ENSGALG00000015617 373.95 3010.38 ribosomal protein S23
36. RPS10 ENSGALG00000002813 366.13 2947.43 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
37. RPS6 ENSGALG00000015082 358.32 2884.55 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
38. RPL27 ENSGALG00000002837 351.80 2832.07 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
39. RPS4 RPS4 351.80 2832.07
40. RPS27A ENSGALG00000036790 343.98 2769.11 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
41. ENO1 ENSGALG00000002377 329.65 2653.75 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
42. RPS24 ENSGALG00000004871 327.05 2632.82 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
43. EEF1B2 ENSGALG00000008590 323.14 2601.35 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
44. MEIS2 ENSGALG00000039118 317.92 2559.33 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
45. RPS15A ENSGALG00000006771 306.20 2464.98 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
46. MT-ND2 MT-ND2 303.59 2443.97
47. SLC25A6_1 ENSGALG00000016691 299.68 2412.49 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
48. RPL18A 293.17 2360.08 ribosomal protein L18a
49. RPSA 289.26 2328.61 ribosomal protein SA
50. RPS11 ENSGALG00000017299 287.96 2318.14 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
51. ENSGALG00000028992 ENSGALG00000028992 286.65 2307.60
52. TPT1 ENSGALG00000028872 285.35 2297.13 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
53. RPS20 ENSGALG00000014432 280.14 2255.19 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
54. CRHOA CRHOA 273.62 2202.70
55. RPS16 ENSGALG00000026490 264.50 2129.28 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
56. RAN ENSGALG00000002569 259.29 2087.34 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
57. ALDH1A2 ENSGALG00000004270 257.99 2076.88 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
58. RPL14 ENSGALG00000043379 255.38 2055.87 ribosomal protein L14
59. RPL13 ENSGALG00000006179 250.17 2013.92 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
60. RPS15 ENSGALG00000015195 246.26 1982.45 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
61. RPL4 ENSGALG00000007711 242.35 1950.97 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
62. CNN3 ENSGALG00000005597 239.75 1930.04 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
63. RPS12 ENSGALG00000013990 238.44 1919.49 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
64. RPL32 ENSGALG00000027142 235.84 1898.56 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
65. EIF1 ENSGALG00000028517 234.53 1888.02 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
66. RPLP1 ENSGALG00000030878 234.53 1888.02 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
67. ENSGALG00000002696 ENSGALG00000002696 221.51 1783.20
68. RPL6 ENSGALG00000004818 220.20 1772.66 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
69. RPS14 ENSGALG00000004588 218.90 1762.19 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
70. CALM CALM 216.29 1741.18
71. COL1A2 ENSGALG00000009641 216.29 1741.18 collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]
72. RPL12 ENSGALG00000008806 213.69 1720.25 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
73. RPL3 ENSGALG00000012172 213.69 1720.25 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
74. LUM ENSGALG00000011271 212.38 1709.71 lumican [Source:NCBI gene;Acc:417891]
75. HMGN2 HMGN2 208.48 1678.31
76. RPL23A ENSGALG00000003966 205.87 1657.30 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
77. RPS3A ENSGALG00000010077 205.87 1657.30 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
78. H2AFZ ENSGALG00000014023 203.26 1636.29 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
79. ANP32B ENSGALG00000037483 200.66 1615.36 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
80. RPL10A ENSGALG00000002644 200.66 1615.36 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
81. ATP5G3 199.35 1604.81 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
82. ENSGALG00000018386 ENSGALG00000018386 199.35 1604.81
83. EIF3F ENSGALG00000005326 198.05 1594.35 eukaryotic translation initiation factor 3 subunit F
84. NONO ENSGALG00000005507 195.45 1573.42 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
85. FKBP4 ENSGALG00000014331 194.14 1562.87 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
86. HMGN5 ENSGALG00000007131 191.54 1541.94 high mobility group nucleosome binding domain 5, transcript variant X1
87. PRDX1 ENSGALG00000010243 190.23 1531.39 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
88. RPS29 ENSGALG00000012229 186.32 1499.92 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
89. RPL35A ENSGALG00000007611, ENSGALG00000041230 183.72 1478.99 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
90. SNRPG ENSGALG00000028409 179.81 1447.51 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
91. RPL38 ENSGALG00000001465 178.51 1437.04 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
92. RPL36 ENSGALG00000000474 177.20 1426.50 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
93. YWHAZ ENSGALG00000031387 175.90 1416.03 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
94. HMGB1 ENSGALG00000042875 173.30 1395.10 high mobility group box 1 [Source:NCBI gene;Acc:395724]
95. HNRNPDL ENSGALG00000023199 171.99 1384.56 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
96. RPLP2 ENSGALG00000034811 170.69 1374.09 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
97. EIF4EBP1 ENSGALG00000003205 166.78 1342.62 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
98. RPL9 ENSGALG00000000150 165.48 1332.15 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
99. RPS21 ENSGALG00000005338 162.87 1311.14 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
100. CDC42 ENSGALG00000004796 161.57 1300.67 cell division cycle 42 [Source:NCBI gene;Acc:395917]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA