Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s32.

Sample reads: 124,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 4033.31 32466.78
2. MT-ND5 MT-ND5 4006.40 32250.17
3. MT-CO3 MT-CO3 3667.93 29525.60
4. ENSGALG00000018384 ENSGALG00000018384 3523.48 28362.82
5. gga-mir-3533 ENSGALG00000027736 2298.48 18501.99 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. EEF1A EEF1A 1818.39 14637.42
7. MT-CYB MT-CYB 1730.58 13930.58
8. gga-mir-3527 gga-mir-3527 1682.43 13542.99
9. MT-CO1 MT-CO1 1562.06 12574.05
10. MT-ND4 MT-ND4 1494.08 12026.84
11. MT-ND1 MT-ND1 1470.01 11833.08
12. MT-ND3 MT-ND3 970.09 7808.90
13. GAPDH ENSGALG00000014442 937.52 7546.72 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. NME2 ENSGALG00000002932 853.96 6874.09 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. ENSGALG00000018386 ENSGALG00000018386 811.48 6532.14
16. MDK ENSGALG00000008367 718.01 5779.74 midkine [Source:NCBI gene;Acc:423196]
17. MT-ND2 MT-ND2 708.09 5699.89
18. PPIA ENSGALG00000028600 662.78 5335.15 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
19. RPL5 ENSGALG00000005922 599.05 4822.15 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
20. RPL26 RPL26 546.65 4400.35
21. RPL8 ENSGALG00000016232 521.16 4195.16 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
22. TMSB4X ENSGALG00000026383 453.18 3647.95 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
23. RPL27A ENSGALG00000005948 416.36 3351.56 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
24. ATP6V0C ENSGALG00000009229 409.28 3294.57 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
25. RPS3 ENSGALG00000017330 397.95 3203.36 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
26. CIRBP ENSGALG00000030918 385.20 3100.73 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
27. RPL7A ENSGALG00000003197 376.71 3032.39 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
28. RPS10 ENSGALG00000002813 368.21 2963.97 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
29. EIF4G2 ENSGALG00000005587 365.38 2941.19 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
30. RPL15 ENSGALG00000011290 358.30 2884.19 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
31. H3-IX H3-IX 352.63 2838.55
32. RPL7 ENSGALG00000035252 349.80 2815.77 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
33. RPS23 ENSGALG00000015617 339.89 2736.00 ribosomal protein S23
34. RPS7 ENSGALG00000016392 338.47 2724.57 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
35. RPS27A ENSGALG00000036790 335.64 2701.79 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
36. RPS6 ENSGALG00000015082 334.22 2690.36 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
37. RPS4 RPS4 324.31 2610.59
38. RPS20 ENSGALG00000014432 311.56 2507.95 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
39. RPL23 ENSGALG00000001634 310.15 2496.60 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
40. ENO1 ENSGALG00000002377 308.73 2485.17 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
41. MEIS2 ENSGALG00000039118 308.73 2485.17 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
42. RPL21 ENSGALG00000027035 307.31 2473.74 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
43. STMN1 ENSGALG00000001475 305.90 2462.39 stathmin 1 [Source:NCBI gene;Acc:396057]
44. SLC25A6_1 ENSGALG00000016691 301.65 2428.18 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
45. RPL31 ENSGALG00000016775 284.65 2291.34 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
46. RPS15A ENSGALG00000006771 283.24 2279.99 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
47. ENSGALG00000028992 ENSGALG00000028992 281.82 2268.56
48. EEF1B2 ENSGALG00000008590 280.41 2257.21 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
49. RPL14 ENSGALG00000043379 278.99 2245.78 ribosomal protein L14
50. RPS11 ENSGALG00000017299 271.91 2188.78 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
51. TPT1 ENSGALG00000028872 267.66 2154.57 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
52. EIF1 ENSGALG00000028517 266.24 2143.14 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
53. RPSA 264.83 2131.79 ribosomal protein SA
54. RPL27 ENSGALG00000002837 260.58 2097.58 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
55. RPL4 ENSGALG00000007711 252.08 2029.16 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
56. RAN ENSGALG00000002569 247.83 1994.95 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
57. ATP5G3 245.00 1972.17 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
58. RPLP1 ENSGALG00000030878 245.00 1972.17 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
59. RPS16 ENSGALG00000026490 245.00 1972.17 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
60. HMGN5 ENSGALG00000007131 243.58 1960.74 high mobility group nucleosome binding domain 5, transcript variant X1
61. RPL18A 235.09 1892.40 ribosomal protein L18a
62. CRHOA CRHOA 233.67 1880.96
63. CALM CALM 230.84 1858.18
64. RPS24 ENSGALG00000004871 228.01 1835.40 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
65. H2AFZ ENSGALG00000014023 223.76 1801.19 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
66. LUM ENSGALG00000011271 216.68 1744.20 lumican [Source:NCBI gene;Acc:417891]
67. RPS3A ENSGALG00000010077 213.84 1721.34 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
68. RPL12 ENSGALG00000008806 209.60 1687.21 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
69. RPL13 ENSGALG00000006179 209.60 1687.21 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
70. RPL6 ENSGALG00000004818 208.18 1675.78 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
71. RPL32 ENSGALG00000027142 205.35 1653.00 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
72. RPLP2 ENSGALG00000034811 202.52 1630.22 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
73. RPL10A ENSGALG00000002644 199.68 1607.36 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
74. RPS12 ENSGALG00000013990 194.02 1561.80 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
75. RPL23A ENSGALG00000003966 191.19 1539.01 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
76. CNN3 ENSGALG00000005597 189.77 1527.58 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
77. RPL38 ENSGALG00000001465 186.94 1504.80 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
78. YWHAZ ENSGALG00000031387 182.69 1470.59 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
79. RPL35A ENSGALG00000007611, ENSGALG00000041230 181.27 1459.16 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
80. SNRPG ENSGALG00000028409 181.27 1459.16 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
81. ENSGALG00000002696 ENSGALG00000002696 175.61 1413.60
82. RPL9 ENSGALG00000000150 175.61 1413.60 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
83. RPL36 ENSGALG00000000474 174.19 1402.17 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
84. RPS29 ENSGALG00000012229 172.78 1390.82 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
85. PNRC1 ENSGALG00000015780 171.36 1379.39 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
86. ANP32B ENSGALG00000037483 167.11 1345.18 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
87. COL1A2 ENSGALG00000009641 167.11 1345.18 collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]
88. EIF3F ENSGALG00000005326 167.11 1345.18 eukaryotic translation initiation factor 3 subunit F
89. EIF4EBP1 ENSGALG00000003205 167.11 1345.18 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
90. RPL3 ENSGALG00000012172 167.11 1345.18 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
91. TCEB3 ENSGALG00000034625 165.69 1333.75 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
92. gga-mir-3526 ENSGALG00000029121 162.86 1310.97 gga-mir-3526 [Source:miRBase;Acc:MI0015377]
93. MT-ATP8 MT-ATP8 160.03 1288.19
94. NUCKS1 ENSGALG00000000708 160.03 1288.19 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
95. FKBP4 ENSGALG00000014331 158.61 1276.76 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
96. HMGB1 ENSGALG00000042875 158.61 1276.76 high mobility group box 1 [Source:NCBI gene;Acc:395724]
97. HMGN2 HMGN2 158.61 1276.76
98. HNRNPDL ENSGALG00000023199 155.78 1253.98 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
99. CADM1 ENSGALG00000014582 151.53 1219.77 cell adhesion molecule 1 [Source:HGNC Symbol;Acc:HGNC:5951]
100. NDUFB9 ENSGALG00000042242 148.70 1196.98 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA